Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g338 ATGGCCTTTTCTCTCTCTAACCACCTCCTCTTCACCCCAAAACCCTCTAAAACCCTTGCTCTTCATCCTCCTCATCCCTCTAAACCCATTCTAGGGTTTCGTCTCTCTACTTCCTCCCCAATTCTCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGTGAAGCAGATCAGAAACCTCTGTCTGTTTTGAAGTCGCTTATTAAAGCATACAAAGATGCTGTTTTAGATGGAGATGAAAAGGCTGTATCTGAAATTGAAGCAATGATAGACACGATTGAAAGTGAGAAGGCTGAATTGGCACAGAAAGTTTCTGCTTTATCAGCAGAAATAACATCTGGGAAGGAGAAATATATTCGTTTACAAGCAGATTTTGATAATTTTAGGAAAAGATCAGAGAAGGAAAGGCTTACAGTAAGAACTGATGCTCAAGGAGAAGTAGTTGAGAGCCTTTTGCCCATGATTGACAATTTTGAGAGAGCCAAACAACAAATCAAACCTGAAACTGAAAAGGAGAAAAAAATTGATACAAGCTATCAGGGTATATACAAGCAATTTGTGGAGATCATGAGGAGTTGTCATGTGGCTGCTGTAGCAACAGTGGGAAAGCCATTTGATCCTGCACTGCATGAGGCCATTGCCCGTGAGGAGTCTCAAGAATTCAAGGAAGGGATTATAATTCAAGAAATTCGCCGGGGCTTCCTCCTTGGTGATCGACTTCTAAGACCAGCAATGGTTAAAGTCTCCACAGGCCCTGGTAGGAAGAAAACTTCTGCTGTTGCTGATAAATCTACAGGCCAACCTGCAACAGCTGCTGGAGTAGATGAACGATAG 897 42.14 MAFSLSNHLLFTPKPSKTLALHPPHPSKPILGFRLSTSSPILRRSFKPFLALQDSTPYTNNEEEGSRYDVKTSKSEADQKPLSVLKSLIKAYKDAVLDGDEKAVSEIEAMIDTIESEKAELAQKVSALSAEITSGKEKYIRLQADFDNFRKRSEKERLTVRTDAQGEVVESLLPMIDNFERAKQQIKPETEKEKKIDTSYQGIYKQFVEIMRSCHVAAVATVGKPFDPALHEAIAREESQEFKEGIIIQEIRRGFLLGDRLLRPAMVKVSTGPGRKKTSAVADKSTGQPATAAGVDER* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3759264 3763554 + Vvi18g338 Vvi18g338 780041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g338 298 CDD GrpE 136 269 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 Hamap Protein GrpE [grpE]. 61 271 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 Gene3D - 98 212 IPR013805 -
Vvi18g338 298 PANTHER GRPE PROTEIN 37 288 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 PANTHER GRPE PROTEIN HOMOLOG 37 288 - -
Vvi18g338 298 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 218 272 IPR009012 GO:0006457
Vvi18g338 298 PRINTS GrpE protein signature 140 156 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 PRINTS GrpE protein signature 168 183 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 PRINTS GrpE protein signature 223 238 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 PRINTS GrpE protein signature 250 269 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 Pfam GrpE 115 271 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 ProSitePatterns grpE protein signature. 226 269 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g338 298 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 119 212 IPR013805 -
Vvi18g338 298 MobiDBLite consensus disorder prediction 269 298 - -
Vvi18g338 298 Coils Coil 104 131 - -
Vvi18g338 298 Gene3D Head domain of nucleotide exchange factor GrpE 216 270 IPR009012 GO:0006457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g338 K03687 GRPE; molecular chaperone GrpE - vvi:100260744 573.548
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28