Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g34 ATGGAAAAACAAGCAGCAAACCTTTATACCAGAAAGATATTCACGCAATTTCAGGAGGAATTAGTAGAGACTCTTGCTAATCCGGCAACTGTAATTGATGATGGGGGATCAGAGGCTTTGTATCGGGTTGCAAAATTTGGGGAAGACCACAAAGCACACTTCATTAAATTCAATGTTTTTGAAAGGAAAGCTAGCTGTAGCTGCCAAATGTTTGAGTTTTCTGGTATTATCTGTAGGCACATATTGGCAGTTTTTAGAGTAACAAATGTTCTTACACTGCCATCTCATTACATCTTGAAGCGCTGGACAAGAAATGCGAAAAGTGGGGTTATATTGGATGAGCACACTCTTGGATTACCAGGCAGTTCTCAAGAGTCTTTAACTGCTCGCTATGAAAATCTTCGTCGGGAAGCTATCAAATATGTAGAAGAAGGGGCAGCATCAACACATATTTATAATGTGGCGATGGATGCTCTACATGAAGCAGCAAAGAAAGTTTATGCTGCAAAGAAACAGGGTGCTGGGGTCACACCAAGTACTTCGGTTAAAGAATGCCAGCTTCAATCTAGTTCTGTGGAGCAGGACAAGAGAATTGAAGAACTGACAGCAGAGTTGGAAAATGCAAGTCAGAGGTGTGAGGCATATCGAGCCAGTCTGCTTGCTGTTTTGAAAGATATGGAAGAAGAGAAATTAAAGATAGCAGTGAAAGTTCAGAACACAAGGCTGAATCTCAAAGTTGAAAAAAATATTCATTAG 756 40.34 MEKQAANLYTRKIFTQFQEELVETLANPATVIDDGGSEALYRVAKFGEDHKAHFIKFNVFERKASCSCQMFEFSGIICRHILAVFRVTNVLTLPSHYILKRWTRNAKSGVILDEHTLGLPGSSQESLTARYENLRREAIKYVEEGAASTHIYNVAMDALHEAAKKVYAAKKQGAGVTPSTSVKECQLQSSSVEQDKRIEELTAELENASQRCEAYRASLLAVLKDMEEEKLKIAVKVQNTRLNLKVEKNIH* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 438421 443080 + Vvi18g34 Vvi18g34 779737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g34 251 SMART 26again6 64 91 IPR006564 GO:0008270
Vvi18g34 251 Coils Coil 124 144 - -
Vvi18g34 251 Coils Coil 191 218 - -
Vvi18g34 251 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 186 IPR031052 GO:0006355
Vvi18g34 251 Pfam SWIM zinc finger 41 87 IPR007527 GO:0008270
Vvi18g34 251 ProSiteProfiles Zinc finger SWIM-type profile. 57 89 IPR007527 GO:0008270
Vvi18g34 251 PANTHER PROTEIN FAR1-RELATED SEQUENCE 9 1 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g34 - - - vvi:100259892 480.715
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g320 Vvi18g34 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g34 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365