Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g343 ATGGCAGAGCAAACCCAGATAGAAATCAAACCTCCACAACCCGCTCACCATTCCGATGCCGGTGATGATCAAGTGCTAGAGCAGCAGGTTCGGTTCTTCAAGTCTGGCACTCGAAAGAGAGAGGACAGCTGGGTCATCTCCCTCTTCGTGGTCCTCCACATTGTAGCCTTCGCAGCCACCATGTTTGTCAATGATTGTTGGCAAAACTCTCACCGTGATTGCGCCATCAAAGTTCTTGGACGCCTGTCCTTTCAGCCACTTTGGGAGAATCCGCTGCTCGGTCCTTCCTCGTCCACTCTAGATGAAATGGGGGCTCTTCAACAGACATTTTTGGCAAATCATCATCAAACTTGGCGTCTTTTCACGTGCCTATGGCTGCATGCTGGAGCAATTCACCTTATTATTAACCTTTCTAGTGTTATTTTTGTTGGAATTCACTTGGAACAAGAGTTTGGACCACTGAGGATTGGTATGGTATACATACTATCTGCTTTTTTCGGTAGTTTGGTAGCTACCCTTTTTCTTCAAAAGAGCCCTGCAGTTGGTTCATCTGGTGCTCTGTTTGGACTACTAGGCTCCATGCTTTCCGGTCTTATATGTAACTGGAAAGTTTACACTGATAAGCTTGCAGCTCTGTCTGCACTTCTCCTTGTAGCCGTGATCAATTTTGCACTTGGCTTGCTACCTTATGTTGACAACTTTTCAAACTTGGGAGGGTTTATATCAGGGGTCCTTCTAGGATTTGTTCTCCTATTCAGCCCTAGGCTTCCAAGAATGGCTGAAAAAAAAGGTGGCTTCTTTGATTACAGTGTCAAAAAATCCATCAGATTAAAGCAGAAATTGGACAGGCCGGTGCTGAGGAGTGTTTCTTTTGTTCTCTTTGGTCTTGTATTAGCAGGAGCCATTGTTGCTGTTCTTCATGGCATAGACATGAACAAATACTGCAGTTGGTGTCAGTATATCAATTGTGTCCCTTCCAACAGGTGGAGCTGCAATACCAAAGTAACAGCTTGTCAGGTAGAGTTGTGA 1029 45.09 MAEQTQIEIKPPQPAHHSDAGDDQVLEQQVRFFKSGTRKREDSWVISLFVVLHIVAFAATMFVNDCWQNSHRDCAIKVLGRLSFQPLWENPLLGPSSSTLDEMGALQQTFLANHHQTWRLFTCLWLHAGAIHLIINLSSVIFVGIHLEQEFGPLRIGMVYILSAFFGSLVATLFLQKSPAVGSSGALFGLLGSMLSGLICNWKVYTDKLAALSALLLVAVINFALGLLPYVDNFSNLGGFISGVLLGFVLLFSPRLPRMAEKKGGFFDYSVKKSIRLKQKLDRPVLRSVSFVLFGLVLAGAIVAVLHGIDMNKYCSWCQYINCVPSNRWSCNTKVTACQVEL* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3842547 3845101 - Vvi18g343 Vvi18g343 780046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g343 342 SUPERFAMILY Rhomboid-like 41 256 IPR035952 -
Vvi18g343 342 PANTHER RHOMBOID-RELATED 3 340 IPR002610 GO:0004252|GO:0006508|GO:0016021
Vvi18g343 342 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g343 342 Pfam Rhomboid family 113 251 IPR022764 GO:0004252|GO:0016021
Vvi18g343 342 Gene3D - 37 253 IPR035952 -
Vvi18g343 342 PANTHER RHOMBOID-LIKE PROTEIN 8 3 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g343 - - - vvi:100259231 666.381
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g343 . . . . Bpe02g00087 . . Bma01g02631 Cmo05g00503 . . . . . . . . . . . . . . . Cla08g01086 Cam08g1538 Cec08g1112 Cco08g1239 Clacu08g1241 . Cre08g1022 . . . . . . . Cme03g01498 . . . . . . . . . . . . Cma05g00480 Car05g00428 . Cpe11g00420 . . . . . . . . . . . . . . . Lsi08g00943 . Chy03g01009 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012013 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 29