Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g345 ATGAGTAATCTGAGAACGATTTGTAGACCTCACATCCACATAGTATTCTTCTCTTCCTTCATATGCTGCAGAAGCCAAGCTGCCAAATCTAGGATTTCTTTTCGAAACCCTAACTCCCAGTCCCGTGTATCCTTGCCTTGTGCGTTCTCTCCTTGGTTTGATTCCAACAGAAATGAGCCGTGGTTTCGTGTGAGTCAGAGGAGAACGCTGGTTAGAGCATCCAAGTGGACCGACGAGAAGTCTCCCTATGAGACTCTTGAGTTGGACAGGGATGCTGATGAAGAAAAAATAAAGTTGGCTTATAGACGCTTGGCCAAATTTTATCATCCAGATGTTTATGATGGTAGGGGGACCCTTGCAGAAGGGGAAACAGCTGAAGCTCGATTCATTAAGATTCAAGCTGCCTATGAGTTGCTCATAGATGATAAGAAGCGGAGGCAATATGATAATGACAACCGAGTTAACCCAATGAAGGCATCTCAAGCATGGATGGAGTGGCTAATGAAAAAGCGAAAAGCTTTTGACCAGCGGGGTGATATGGCCATTGCAGCTTGGGCTGAGCAGCAGCAGCGTGAGTTGAACCTTCGTGCACGCCGTCTTTCCCGTTCAAAGATTGATCCAGAAGAAGAGAGGAGGATCCTGGCAAAAGAAAAGAAGGCATCCAAGGAGTACTTCTCTAATACCCTTAAGCGGCACACACTAATCTTAAAGAAAAGGGACTTGATGCGAAAGAAAGCTGAGGAAGAAATGAAGAAGTCTATCAGTCAGCTTTTAGCTGCAGAGGGCCTTGAGCTCGATACTGATGATGAAGCATTGTAG 819 45.54 MSNLRTICRPHIHIVFFSSFICCRSQAAKSRISFRNPNSQSRVSLPCAFSPWFDSNRNEPWFRVSQRRTLVRASKWTDEKSPYETLELDRDADEEKIKLAYRRLAKFYHPDVYDGRGTLAEGETAEARFIKIQAAYELLIDDKKRRQYDNDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAIAAWAEQQQRELNLRARRLSRSKIDPEEERRILAKEKKASKEYFSNTLKRHTLILKKRDLMRKKAEEEMKKSISQLLAAEGLELDTDDEAL* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3852040 3861196 - Vvi18g345 Vvi18g345 780048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g345 272 CDD DnaJ 82 141 IPR001623 -
Vvi18g345 272 ProSitePatterns Nt-dnaJ domain signature. 129 148 IPR018253 -
Vvi18g345 272 PRINTS DnaJ domain signature 83 101 IPR001623 -
Vvi18g345 272 PRINTS DnaJ domain signature 101 116 IPR001623 -
Vvi18g345 272 PRINTS DnaJ domain signature 124 144 IPR001623 -
Vvi18g345 272 PRINTS DnaJ domain signature 170 189 IPR001623 -
Vvi18g345 272 PANTHER CO-CHAPERONE PROTEIN DJLA 51 269 - -
Vvi18g345 272 SMART dnaj_3 80 144 IPR001623 -
Vvi18g345 272 PANTHER LD30543P 51 269 - -
Vvi18g345 272 ProSiteProfiles dnaJ domain profile. 81 152 IPR001623 -
Vvi18g345 272 SUPERFAMILY Chaperone J-domain 72 150 IPR036869 -
Vvi18g345 272 Pfam DnaJ domain 82 149 IPR001623 -
Vvi18g345 272 Gene3D DnaJ domain 69 175 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g345 - - - vvi:100250529 547.354
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40