Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g346 ATGAGCTCTTCATCAACTCAATTTGCCACCTCAAGAAGGATCGGCATGCATGAGCCACTCCACCAGATTAGCATGTGGAGAGATACCTTCAAAGGTGATAGTAATCCAATTACGGGTGCATCCACAATCATGCAGGTGGATACAATGCTAGACAACAAGTCGGAAAGTACCTCTCATGACTCACTAGGGCCTTCAGGAAACAGTCAACCAGAAGACAGAACCACTGATAAGACACAAAGGCGATTGGCACAAAATCGTGAAGCTGCCCGTAAAAGTCGTTTAAGGAAAAAGGCTTATGTTCAGCAATTAGAAACAAGCAGATTGAAGCTGACAGAACTGGAGCAGGAGCTTGAGAGAGCCAGACAGCAGGGTTTGTACATTGGGGGTTCCTTAGATACTACTCGAGTAGGTTTTTCTGGAACTATAAATTCAGGGATTGCCACGTTTGAGATGGAATATGGGCACTGGGTTGAGGAGCAACATAGACAGAATTGTGAGCTTAGGAATGCTCTGCAAGCTCATGTAACTGATATAGAGCTTCGTATACTTGTGGAAAGTGCTTTAAATCACTATTATGAACTTTTTCGCATGAAGGCTGATGCTGCAAAGGCAGATGTCTTTTATCTTATGTCTGGCATGTGGAGAACATCAGCTGAACGATTTTTTCTCTGGATTGGAGGATTCCGCCCATCAGAGCTTCTAAATGTTCTTATGCCACATTTTGAGCCTTTGACTGATCAACAACTCCTGGATGTCTGCAACCTACGACAATCATCACAACAAGCTGAAGATGCTTTGTCTCAAGGAATGGATAAACTTCAGCAGACTCTGGCCCAGAGCATAGTTACTGATCCAGTGGGTGCTGGAAACTATAGGTCTCAGATGGCTGAAGCAGTGGAGAAGCTGGATGCATTAGAGAGCTTTGTAAACCAGGCAGATCATCTTCGTCAGCAAACCCTGCGACAAATGTCTCATCTACTAACAACCCGTCAAGCAGCCCGAGGCCTACTTGCTTTGGGGGAGTACTTTCATCGTCTTCGAGCTCTTAGTTCTCTTTGGGCTGCTCGTCCCCGTGAGCCTGCCTAG 1086 45.58 MSSSSTQFATSRRIGMHEPLHQISMWRDTFKGDSNPITGASTIMQVDTMLDNKSESTSHDSLGPSGNSQPEDRTTDKTQRRLAQNREAARKSRLRKKAYVQQLETSRLKLTELEQELERARQQGLYIGGSLDTTRVGFSGTINSGIATFEMEYGHWVEEQHRQNCELRNALQAHVTDIELRILVESALNHYYELFRMKADAAKADVFYLMSGMWRTSAERFFLWIGGFRPSELLNVLMPHFEPLTDQQLLDVCNLRQSSQQAEDALSQGMDKLQQTLAQSIVTDPVGAGNYRSQMAEAVEKLDALESFVNQADHLRQQTLRQMSHLLTTRQAARGLLALGEYFHRLRALSSLWAARPREPA* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3861741 3869760 - Vvi18g346 Vvi18g346 780049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g346 361 Coils Coil 96 123 - -
Vvi18g346 361 MobiDBLite consensus disorder prediction 1 20 - -
Vvi18g346 361 MobiDBLite consensus disorder prediction 53 72 - -
Vvi18g346 361 ProSiteProfiles DOG1 domain profile. 146 356 IPR025422 GO:0006351|GO:0043565
Vvi18g346 361 SUPERFAMILY Leucine zipper domain 77 119 IPR046347 GO:0003700|GO:0006355
Vvi18g346 361 SMART brlzneu 73 136 IPR004827 GO:0003700|GO:0006355
Vvi18g346 361 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700|GO:0006355
Vvi18g346 361 PANTHER TRANSCRIPTION FACTOR TGA1 1 360 - -
Vvi18g346 361 MobiDBLite consensus disorder prediction 53 95 - -
Vvi18g346 361 PANTHER TRANSCRIPTION FACTOR TGA9 1 360 - -
Vvi18g346 361 Gene3D - 76 125 - -
Vvi18g346 361 Pfam Seed dormancy control 165 238 IPR025422 GO:0006351|GO:0043565
Vvi18g346 361 Pfam bZIP transcription factor 75 117 IPR004827 GO:0003700|GO:0006355
Vvi18g346 361 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700|GO:0006355
Vvi18g346 361 MobiDBLite consensus disorder prediction 73 89 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1127 Vvi18g346 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14320 PF14144 DOG1 7.00E-31 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g346 K14431 - vvi:100255706 704.901