Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g347 ATGGACTTGAGAAGAATGGCGTCTGCAAACAGATCTCAGCAGTCAAAGTTTCCACAAGGGTATCTCTACCATCTGATCTTTAATGAGCTTCAGACCCAGTTGGGAAATGTGGGCAAACCTTTAAGTAGTATGTATTTGGATGAGTTACTGAAACATGTGATATCTGCTGAAAAGGGCCAGTACTTCATGCAAAACCCTGCTGCTTCTTCCTCCTCTTCTTCTTCATCACCCGCTTCCTTGTTTCTTGGGAATTTCAATTTGAATGGGGTTCTGGATAAGAAAACAGTTGAAGAGGTCTGGGAGGAAATCCTTCATCACCAGCATCTCAGTGGTGCAGATAATGGACCAATCCAGCACCTTTCGACACTGGGCGAAACAACTCTTGAGGAGTTTCTAGTGCGCGCAGGTCTTCCGGTGGAAGCTGCTCAGCAGCAGCAACCAGGAGTGTTGGACTCAAGTTTCCATGTTTCTGAATCAGTTTTCGAGGGTCCAGCCATTGAGATTGGTTACTCTAAGAACCAAATGGCTATGTCAACGGCAGTACCGGCAGTGACAACATCATCTCCAAACTCCCCGGTTGCTGTTGAAAGGAAGCGCTGGTTTTCAGATGAGATGATGAAGACCATTGAGAGGAGGCAGAAGAGGATGATCAAGAACCGTGAGTCGGCTGCTAGGTCAAGGGCAAGGAAGCAGGCTTATACCAATCACTTGGAGCATGAAGTCCATCAGTTGAAGAAAGAGAACGACTTGCTCATAAGGCTAAAGGAATTGCAGATGCGGTGGTCTTTGAATCCAACACCGGGGCCCAAATACCAACTGCGGCGTACCAGCTCGTGTCTGTTCTAG 846 47.28 MDLRRMASANRSQQSKFPQGYLYHLIFNELQTQLGNVGKPLSSMYLDELLKHVISAEKGQYFMQNPAASSSSSSSSPASLFLGNFNLNGVLDKKTVEEVWEEILHHQHLSGADNGPIQHLSTLGETTLEEFLVRAGLPVEAAQQQQPGVLDSSFHVSESVFEGPAIEIGYSKNQMAMSTAVPAVTTSSPNSPVAVERKRWFSDEMMKTIERRQKRMIKNRESAARSRARKQAYTNHLEHEVHQLKKENDLLIRLKELQMRWSLNPTPGPKYQLRRTSSCLF* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3875299 3878509 + Vvi18g347 Vvi18g347 780050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g347 281 Gene3D - 209 261 - -
Vvi18g347 281 SMART brlzneu 207 260 IPR004827 GO:0003700|GO:0006355
Vvi18g347 281 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 209 251 IPR004827 GO:0003700|GO:0006355
Vvi18g347 281 CDD bZIP_plant_BZIP46 211 261 - -
Vvi18g347 281 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 22 258 IPR043452 GO:0003700|GO:0045893
Vvi18g347 281 Pfam bZIP transcription factor 211 258 IPR004827 GO:0003700|GO:0006355
Vvi18g347 281 SUPERFAMILY Leucine zipper domain 211 254 IPR046347 GO:0003700|GO:0006355
Vvi18g347 281 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 214 229 IPR004827 GO:0003700|GO:0006355
Vvi18g347 281 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 3 22 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g347 K14432 ABF; ABA responsive element binding factor - vvi:100242121 522.702
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g347 . Blo12g00693 . . . Bpe04g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00642 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003807 1 3 1 1 1 0 2 1 1 0 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 1 1 8 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14321 PF00170 bZIP_1 7.80E-14 CL0018 Vvi TF