Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g349 ATGACTAGAAAAACCAGCAGCTGTAGTATTTGTGAGAAATCGAATCTTGCTTCTATTTGCGCCGTTTGCGTCAATTACAGATTAAATGAATATAATACTTCATTGAAATCATCGAAGGGTCGTCGGGACTCCCTTTACTTGAGATTGAGTGAAGTTCTTGTGGCAAAGGGGAAGGCAGATGATCAAATAAATTGGAGAGTACTTCAAAATGAGAAGCTGGCCAGGCTGAGGGAGAAGCTTCGTCATAGAAAAGAACAATATTTGGATGGGAAGGCTAAAGTTGAGAAGATGTCTAATGATTTGAAACTCAAATATGGGCTGCTTGAATCAGCCATGTCCATGTTGGAAAAAAATCGCGTGGAACAACTGGAGAAGTTCTATCCTAACCTTATTTGCACACAGAACTTAGGGCTTATGGCAATAACCTCTGAACGTTTTCATAAGCAGTCGGTGGTTATAAAACAGATATGCAAATTATTCCCTCAACGTCGGGTGAATATTGATGGAGAGAAGAAAGATGGATCTAGTAGGCCATATGACCAAATTTGTAATGTACGCTTACCGAGAGTACTTGATCCTCATTCTGTCCCATCAGATGAGCTTGCTGCCTCATTGGGGTACATGGTGCAACTTCTAAATCTTGTGGTTTACAACTTGGCTGCTCCTGCCCTTCATAACTCAGGTTTTGCGGGTTCATGCTCTAGAATATGGCAGCGAGAGTCTTATTGGAATCCACGGCCGTCTTCCAGAAGCAATGAATATCCCCTGTTTATACCGCGACAAAATCTTTGCTCCACTAATGGGGAAAATTCATGGTCTGAAAGAAGCTCGAGTAATTTTGGCATTGCTTCAATGGAATCTGACAGGAAGCCTCGTCTAGAATCCTCAGGAAGTAGTAGTTTTAACTATTCTTCAGCTTCTCTGCATTCTGTTGAAACTCACAAGGACCTGCAGAAAGGAATTTCACTTCTTAAAAAAAGTGTGGCATGCTTAACCACATACTGTTATAGCTCATTATGTTTAGATGTTCCTACTGAGGCTTCTACATTTGAAGCATTTGCAAAGTTGTTGGCCATACTATCTTCTTCCAAGGAAGTTCGATCTGTTTTCTCCTTGAAAATGGCTTGCTCAAGGTCATGTAAACAAGTTCAACAATTGAACAAATCCATATGGAACATGAATTCAGCAATTTCATCAAGCACTTTACTGGAGAGTGCGCATACACTGCCTATGACGAGGAATATTTTCGATAATAACCTTCCAAATTCTGCTGCTAGTTTCCTTTATACCACTGAGATGTCTGATATTGGAAAGAATGAAAGCCTTATTGAAGAATGGGATCTTGTGGAGCATGCCAATTTTCCACCTCCACCGTCACAAACCGAGGACATTGAGCACTGGACTCGAGCCATGATAATTGATGCTACAAAAAAATGA 1437 40.71 MTRKTSSCSICEKSNLASICAVCVNYRLNEYNTSLKSSKGRRDSLYLRLSEVLVAKGKADDQINWRVLQNEKLARLREKLRHRKEQYLDGKAKVEKMSNDLKLKYGLLESAMSMLEKNRVEQLEKFYPNLICTQNLGLMAITSERFHKQSVVIKQICKLFPQRRVNIDGEKKDGSSRPYDQICNVRLPRVLDPHSVPSDELAASLGYMVQLLNLVVYNLAAPALHNSGFAGSCSRIWQRESYWNPRPSSRSNEYPLFIPRQNLCSTNGENSWSERSSSNFGIASMESDRKPRLESSGSSSFNYSSASLHSVETHKDLQKGISLLKKSVACLTTYCYSSLCLDVPTEASTFEAFAKLLAILSSSKEVRSVFSLKMACSRSCKQVQQLNKSIWNMNSAISSSTLLESAHTLPMTRNIFDNNLPNSAASFLYTTEMSDIGKNESLIEEWDLVEHANFPPPPSQTEDIEHWTRAMIIDATKK* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3887489 3898689 - Vvi18g349 Vvi18g349 780052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g349 478 Pfam Vacuolar sorting 38 and autophagy-related subunit 14 8 366 IPR018791 -
Vvi18g349 478 PANTHER DNA-DIRECTED RNA POLYMERASE II PROTEIN 1 478 - -
Vvi18g349 478 PANTHER UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN 1 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g349 - - - vvi:100260778 945.651
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g349 . Blo12g00694 . . Bpe02g00090 . . Bma01g02627 . . . . . . Sed03g0662 . . Bhi04g02504 Tan11g0081 Cmetu03g1659 . Hepe02g3443 . Lcy10g2334 . . . . . . . . Cone7ag1570 . . . . . . . . Bda11g00757 . . . . . . . . . . . . . . . . . . . . . Cla11g00768 Cam11g0802 Cec11g0784 Cco11g0790 Clacu11g1056 Cmu11g0916 Cre11g1248 . . Chy03g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008199 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35