Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g35 ATGGAGGCATTTGAGAAGCTGGAGAAGGTAGGGGAAGGGACGTACGGGAAGGTGTACAGAGCGAGAGAGAGGGCAACCGGAAAGATTGTGGCACTGAAGAAGACACGCCTCCATGAGGACGATGAGGGTGTTCCTCCGACCACTCTCCGTGAGGTCTCCTTGCTTCGCATGTTATCCCGAGATCCCCATGTCGTCAGATTGATGGATGTTAAACAAAGCCTGAATAAGGAAGGGAAAACGGTTCTGTACTTGGTGTTTGAGTATATGGACACTGATCTTAAGAAGTATATCCGAAGCTTCCGCCAAACTGGGGAGAATATTCCCACAAAAACCATTAAGAGCTTGATGTACCAATTATGCAAAGGTGTTGCTTTCTGCCATGGTCATGGGGTATTGCACAGGGACCTTAAGCCTCACAATCTCTTGATGGACCGCAAGACAATGATGCTGAAAATAGCAGATCTTGGACTGGCTAGGGCGTTTACTCTTCCTATTAAGAAGTACACTCATGAGATACTGACTTTGTGGTATAGAGCCCCTGAAGTACTTTTGGGGTCTACCCATTACTCAACTGCAGTAGATATGTGGTCAGTTGGCTGTATATTTGCTGAACTAATCACAAAGCAAGCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCAAACTGGCATGAGTTCCCCCAGTGGAGCCCAAATCAGAATCCTAAGAATTCATCATCGGCTTTTCCTAATCTGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATGGAACACCCTTACTTCGACGATCTGGACAAGGACTACCTTTAA 942 46.28 MEAFEKLEKVGEGTYGKVYRARERATGKIVALKKTRLHEDDEGVPPTTLREVSLLRMLSRDPHVVRLMDVKQSLNKEGKTVLYLVFEYMDTDLKKYIRSFRQTGENIPTKTIKSLMYQLCKGVAFCHGHGVLHRDLKPHNLLMDRKTMMLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAELITKQALFPGDSELQQLLHIFKLLGTPNEEMWPGVTKLPNWHEFPQWSPNQNPKNSSSAFPNLSAAVPNLDEDGLDLLSKMLKYDPSERISAKKAMEHPYFDDLDKDYL* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 444049 446447 + Vvi18g35 Vvi18g35 779738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g35 313 Pfam Protein kinase domain 4 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g35 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vvi18g35 313 SUPERFAMILY Protein kinase-like (PK-like) 2 309 IPR011009 -
Vvi18g35 313 ProSiteProfiles Protein kinase domain profile. 4 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g35 313 PANTHER CELL DIVISION PROTEIN KINASE 1 311 - -
Vvi18g35 313 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Vvi18g35 313 SMART serkin_6 4 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g35 313 Gene3D Transferase(Phosphotransferase) domain 1 91 312 - -
Vvi18g35 313 PANTHER - 1 311 - -
Vvi18g35 313 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1265 Vvi18g35 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76372 PF00069 Pkinase 5.60E-74 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g35 K07760 - vvi:100254782 641.343