Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g351 ATGCTCGCACCGCAAATTACTCTCTTTCAACCGCCTTCCCTGTTCACCATTCGAAGGTCTCAATCACCGGAGCCGAGAAAGAACTCGAAAACATGGAAGAGTAACTGCAAAAGTCCCACAAATTTTCTTTGCTTTTCTTTGAAAACTTCTTCTTCCACGACCGAATTTTCTAATTCTTGCAAGTTTTTGAGCTCCCATAAAAATCCAGATGCCGGTTTTTTAAATGTTCAACCAATTGTTGGACATGTCAATGCCAATTTGCTCGCGTTTTGGCTTCAGTCGTGTTGTACAGTAAGAGAAGTTAGAAGGGTACATGCAGTTGTTTTCAAATTCGGGAAGTTAGTGGAGGCTCGCAAGGTGTTTGACAAAATGCCGGAGCGAAATGTTGTTTCTTGGACTGCTGTTGTTAATGGGTATTCGAGATATGGTTTTGATGATGAAGCATTGAGGTTATTCGATGATTGTATTGAGAATGGCGTTCGAGCAAACGGTAAGACTTTTGTTTGTGTTCTGAATTTGTGTAGTAAGAGATTGGATTTTGAGCTTGGAAGGCAAATTCATGCTTGTATTGTGAAAGATAACTGGAGGAACTTGATTGTTGATAGTGCTCTTGTTTGCTTCTATGCACAATGTGGTGATCTGTCTGGGGCTTTTCATGCGTTTGATCAAATGCCTGAGCGGGATGTAGTTTGCTGGACAACCATGATTACTGCTTGCTCCCAACAAGGGCGTGGAACAGAGGCTTTGTCTATGTTCTCACAAATGATGTTCAACACATCTTCTCCTAATGAGTTTACAGTGTGTAGCGTTTTGAAGGCTTGTGGAGAGGAGAAGGCTTTAGAATTTGGAAAGCAGTTACATGGTGCCATAATTAAGAAGATGTTTAAGGAAGATGTTTTCATAGGGACTTCCTTAGTGGGCATGTATGCAAAGTGTGGGGAAATATTAGATTCAAGAAAAGTGTTTGATGGAATGAAGAAGAGAAACACGGTTACGTGGACTTCTATCATAGCTGGATATGCTCGTAATGGGCAGGGGGAGGAGGCCATTAGCCTCTTTCGAGAATTTACTGATGGGAAAGGAAGTTCATGCACAGATCATGAAGAATTCCATGCAAAGCAACATCTACATAGGAAGCACTCTAGTATGGTTCTACTGCAAATCATGCCACAACGGAATTTGGTTTCTTGGAAGGCAATGATTGTGGGTTATGCGAGGAATGGGCTCTGCGGAGAAGCTTTGAAGCTCATGTACCGTATGCAAGCAGAAGGTATCGAGGTGGATGATTATATCCTTACGACAGTCCTTAGTGCATGTGGAGATGTTGAGTGGAATATGGAGTCTTCATCTGACCATTGCTTGCAGTCAAGTTGA 1374 42.07 MLAPQITLFQPPSLFTIRRSQSPEPRKNSKTWKSNCKSPTNFLCFSLKTSSSTTEFSNSCKFLSSHKNPDAGFLNVQPIVGHVNANLLAFWLQSCCTVREVRRVHAVVFKFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVRANGKTFVCVLNLCSKRLDFELGRQIHACIVKDNWRNLIVDSALVCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTSIIAGYARNGQGEEAISLFREFTDGKGSSCTDHEEFHAKQHLHRKHSSMVLLQIMPQRNLVSWKAMIVGYARNGLCGEALKLMYRMQAEGIEVDDYILTTVLSACGDVEWNMESSSDHCLQSS* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3906072 3907917 + Vvi18g351 Vvi18g351 780054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g351 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Vvi18g351 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Vvi18g351 457 PANTHER OS07G0578800 PROTEIN-RELATED 105 253 IPR045215 GO:0003723|GO:0009451
Vvi18g351 457 PANTHER OS07G0578800 PROTEIN-RELATED 385 441 IPR045215 GO:0003723|GO:0009451
Vvi18g351 457 PANTHER OS07G0578800 PROTEIN-RELATED 183 354 IPR045215 GO:0003723|GO:0009451
Vvi18g351 457 Gene3D Tetratricopeptide repeat domain 281 377 IPR011990 GO:0005515
Vvi18g351 457 Gene3D Tetratricopeptide repeat domain 91 178 IPR011990 GO:0005515
Vvi18g351 457 Gene3D Tetratricopeptide repeat domain 179 280 IPR011990 GO:0005515
Vvi18g351 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Vvi18g351 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vvi18g351 457 Pfam PPR repeat 395 425 IPR002885 -
Vvi18g351 457 Pfam PPR repeat 303 329 IPR002885 -
Vvi18g351 457 Pfam PPR repeat 130 160 IPR002885 -
Vvi18g351 457 Pfam PPR repeat 331 355 IPR002885 -
Vvi18g351 457 Pfam PPR repeat 110 129 IPR002885 -
Vvi18g351 457 Pfam PPR repeat family 227 274 IPR002885 -
Vvi18g351 457 TIGRFAM PPR: pentatricopeptide repeat domain 130 163 IPR002885 -
Vvi18g351 457 TIGRFAM PPR: pentatricopeptide repeat domain 230 263 IPR002885 -
Vvi18g351 457 TIGRFAM PPR: pentatricopeptide repeat domain 331 356 IPR002885 -
Vvi18g351 457 TIGRFAM PPR: pentatricopeptide repeat domain 395 428 IPR002885 -
Vvi18g351 457 Gene3D Tetratricopeptide repeat domain 378 455 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g351 - - - vvi:100252377 741.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g351 . . . . . . . . . . . . . . . . . Bhi04g02501 . . . Hepe02g3441 . Lcy10g2332 . . . . . . . . . Cone17ag1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00766 . . . . . . . . Chy03g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012853 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 27