Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g352 ATGGAAGCTAGCAGGAGTATGTCTACCCGTCCTTTGGATCTTGACACAGAAACACAAGGTTCTGCTTGGCCTGAGAAGGCTGTAGCACTTAAAAACTTTGTCAAGGAGAAAGGTACAGTTGCAGTCTCTAGTGTTTTGCGTGTCCTTTCGGGGAAAACAGAGGAGGATGTACATGCTGCTCAGGATGATGAAGATAAGAATAAAACTGTGGAACGGTCTGCATGGAATCCCCTAAACTATATTAAGATTTCGCGAGAAGTTGATGCAGAAAACAAAACCGAACAGAAGGAGGAAATCATTGAAGAACCTGCACGTCCAGTGGGTATGAAAGGAAGAATTATACTGTATACAAGATTAGGATGCCAGGAAAGTAAAGAGGTTCGGCGATTTCTACTTCAGAGAAGACTCAGATATGTTGAAATTAACATTGATGTGTACCCTAGCAGAAAGCTAGAGCTAGAAAAAATTGCAGGGTCTTGTGCTGTTCCGAAGTTGTTTTTTAATGAAGTCCTTATAGGGGGATTGAATGAGGTAAAGGGCCTTGATGAGTCTGGCAAGCTTGATGAGAAGATTAATTATGTGATTTCTGAAGCACCATCATTTGAAGCTCCTTTGCCACCACTTTCTGGTGAAGATGACTTGTCCAGTAGTGGGGCAATTGATGAACTAGCTGCTATTGTCCTCAAAATGAAAGAATCTATTGTTGTTAAGGACCGTTTTTATCGAATGCGCAGGTTCACCAACTGCTTTCTGGGCTCAGAAGCTGTGGATTTTATATCAGAAGATCAATACTTGGAAAGGGAAGAGGCTATTGAATTTGGGCGAAAACTTGCAAGTAAACACTTCTTCCAAAACGTTCTTGATGAGAATGATTTTGAGGATGGCAACCATTTGTACCGGTTCTTGGACCATGATCCTGTAGTGTCGTCTCAGTGTCACAATTTCCTGAGGGGCATACTTGATGTGAAGCCAAAGCCTATAATAGAAATTGCATCAAGGCTTAGATTTTTGTCTTATGCTATCTTTGAAGCTTACACATCAGAAGATGGAAAGCATGTTGATTACAGAAGTATCCATGGGAGTGAGGAATTTGCTAGGTATTTGAGAATAGTTGAGGAGCTCCAAAGAGTAGATTTGCAGGATATGCCAAGGGAAGAGAAGCTTGCTTTCTTTATAAATCTCTACAACATGATGGCCATCCATGGAATATTGGTGTGGGGTTTTCCAGTTGGACCACTTGAGAGAAGGAAGCTTCTTGGAGAATTTAAATATGTTGTTGGTGGGTGCACCTATTCACTTTCTGTTATTGCAAATGGCATCTTAAGGGGCAACCAGCGACCGCCATACAACCTCATTAAGCCATTTGGAATGAGAGACAGACGTGCCAAGGTGGCTCTTCCTTACCCGGAGCCTCTTATCCACTTTGCACTGGTTTTTGGTACCCGATCTGGCCCTCCTCTCAAATGCTACTCACCTGGGAACATTGATCAAGAATTGGTGGAAGCAGCCCGTAATTTTGTAAGAAGTGGAGGATTAATTCTAGATGTTAATGCAAAGGTCGTATCAGCCAGTAAGCTCCTAAAATGGTATAGTGTAGATTTTGGCAAGAACGAAGTTGAGGTATTAAAGCATGCAGCAAACTACTTGGAGCCACCCATCTCCGAAGAGTTACTGGAGGTGCTTGCTACCGGCCAGTTGAAAGTGATATATCAGCCTTATGACTGGGGATTGAACTGCTAG 1740 42.47 MEASRSMSTRPLDLDTETQGSAWPEKAVALKNFVKEKGTVAVSSVLRVLSGKTEEDVHAAQDDEDKNKTVERSAWNPLNYIKISREVDAENKTEQKEEIIEEPARPVGMKGRIILYTRLGCQESKEVRRFLLQRRLRYVEINIDVYPSRKLELEKIAGSCAVPKLFFNEVLIGGLNEVKGLDESGKLDEKINYVISEAPSFEAPLPPLSGEDDLSSSGAIDELAAIVLKMKESIVVKDRFYRMRRFTNCFLGSEAVDFISEDQYLEREEAIEFGRKLASKHFFQNVLDENDFEDGNHLYRFLDHDPVVSSQCHNFLRGILDVKPKPIIEIASRLRFLSYAIFEAYTSEDGKHVDYRSIHGSEEFARYLRIVEELQRVDLQDMPREEKLAFFINLYNMMAIHGILVWGFPVGPLERRKLLGEFKYVVGGCTYSLSVIANGILRGNQRPPYNLIKPFGMRDRRAKVALPYPEPLIHFALVFGTRSGPPLKCYSPGNIDQELVEAARNFVRSGGLILDVNAKVVSASKLLKWYSVDFGKNEVEVLKHAANYLEPPISEELLEVLATGQLKVIYQPYDWGLNC* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3911380 3917340 + Vvi18g352 Vvi18g352 780055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g352 579 Gene3D - 217 308 IPR036388 -
Vvi18g352 579 Pfam Glutaredoxin 113 172 IPR002109 -
Vvi18g352 579 Pfam Protein of unknown function, DUF547 380 507 IPR006869 -
Vvi18g352 579 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 234 301 IPR000591 GO:0035556
Vvi18g352 579 Gene3D Glutaredoxin 107 194 - -
Vvi18g352 579 SUPERFAMILY Winged helix DNA-binding domain 222 311 IPR036390 -
Vvi18g352 579 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 1 578 - -
Vvi18g352 579 SUPERFAMILY Thioredoxin-like 104 192 IPR036249 -
Vvi18g352 579 ProSiteProfiles DEP domain profile. 230 303 IPR000591 GO:0035556
Vvi18g352 579 MobiDBLite consensus disorder prediction 1 16 - -
Vvi18g352 579 SMART DEP_3 230 303 IPR000591 GO:0035556
Vvi18g352 579 CDD DEP 222 300 - -
Vvi18g352 579 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g352 579 ProSiteProfiles Glutaredoxin domain profile. 101 198 - -
Vvi18g352 579 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 1 578 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g352 - - - vvi:100257505 1142.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g1058 Vvi18g352 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g352 . . . . . . . . . . . . . . Sed11g1510 . . Bhi04g02500 Tan11g0084 Cmetu09g1872 . Hepe02g3440 . Lcy10g2331 . . . . . . . . Cone7ag1572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00765 Cam11g0798 Cec11g0780 Cco11g0785 Clacu11g1059 Cmu11g0919 Cre11g1244 . . Chy03g00066 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007851 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 1 2 1 1 36