Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g354 ATGGTTCAATTATTGGGGCACGCTGGAGTCAATGTCAAAAGGGCAATTTCTTCTGCAGATGAATTGTTAGAAAAGTCGTGTTCCGTATACTTGCTCACTTCCATTGGCTTTCTGGTGATGCTGATACTACGAATCTACTTGGCGCCTCAAAATGGGAGGAGAGTTGGTCATGGCACAAAAGTCCCACGCAATATCAATATGGAGCGTCTGCGAAATGGATATTTGTTTTCTGAGATATGCAGACGTGAGCTTGAACACACTCAGAAGTACCCACATGCAAAGTTGATAAAACTTGGAATTGGTGATACGACAGAGCCTATACCGGACATTATTACATCAGCTATGGCTGAGCATGCACATGCTTTATCAACTATTAGAGGTTATAGAGGGTATGGAGCTGAGCAAGGCAACATGGAATTAAGGAATGCAATTGCACAAACATTCTACAGAGATATGGGTATCAAAGCAAATGAGGTTTTTGTATCAGATGGGGCGCAATGTGATATTTCTCGTATCCAGATGCTTCTGGGATCCAATGTAACAGTGGCTGTGCAGGATCCATCTTTTCCGGCATATATGGATTCCAGTGTTATAATTGGTCAATCTGGAAACTTCAAAGAGGAGACCGGGAAGTATGAGAACATTTTGTACATGAACTGTGGACCTGAGAGTAATTTTTTTCCAGACCTGTCAAATACTCCAAGGACAGATATAATTTTCTTATGCTCTCCAAACAATCCAACTGGTCATGCTGCATCCCGGCAGCAATTGGAGCAACTGGTGGAGTTTGCAAAAGCAAATGGATCAATTATTATACACGATTCTGCATATGCTGCTTATATAACAGATGAGAGCCCAAGATCAATCTTTGAAATTCCTGGTGGCAGAGAGGTTGCAATTGAAATATCATCGTTCTCCAAATTTGCTGGGTTCACGGGTGTTCGCCTTGGTTGGACAGTGGTTCCTGAAGAGCTGTTATATTCAAATGGGTTTCCAGTCATAAAGGACTATAATCGCATTGTGTGCACCTGTTTCAATGGTGCATCCAGCATAGCTCAGGCTGGTGGTCTAGCATGCCTTTCCTCAGATGGTTACCTGGCCATGAACGCAGTCCTTGATTACTACAAGGAGAATGCCAAAATAATCATGGACACATTTACATCACTTGGATTGAAGGTACATGGGGGCAAAAATGCACCATACATGTGGGTTCATTTTCCAGGCTTAAGATCTTGGGATGTATTCAATGAGATTCTGGAGAAAACGCACATAATAACTGTTCCTGGAACGGGATTTGGTCCTGGTGGTGAAGGGTACATTAGAGTGAGCGCATTTGGGCAGAGAGAGTCTGTAATTGAAGCTTCAAGGAGGCTGAAAAATCTTTTGAAATAA 1392 42.46 MVQLLGHAGVNVKRAISSADELLEKSCSVYLLTSIGFLVMLILRIYLAPQNGRRVGHGTKVPRNINMERLRNGYLFSEICRRELEHTQKYPHAKLIKLGIGDTTEPIPDIITSAMAEHAHALSTIRGYRGYGAEQGNMELRNAIAQTFYRDMGIKANEVFVSDGAQCDISRIQMLLGSNVTVAVQDPSFPAYMDSSVIIGQSGNFKEETGKYENILYMNCGPESNFFPDLSNTPRTDIIFLCSPNNPTGHAASRQQLEQLVEFAKANGSIIIHDSAYAAYITDESPRSIFEIPGGREVAIEISSFSKFAGFTGVRLGWTVVPEELLYSNGFPVIKDYNRIVCTCFNGASSIAQAGGLACLSSDGYLAMNAVLDYYKENAKIIMDTFTSLGLKVHGGKNAPYMWVHFPGLRSWDVFNEILEKTHIITVPGTGFGPGGEGYIRVSAFGQRESVIEASRRLKNLLK* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3924181 3930364 + Vvi18g354 Vvi18g354 780057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g354 463 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC-RELATED 40 462 - -
Vvi18g354 463 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 63 460 IPR019942 GO:0008483
Vvi18g354 463 CDD AAT_like 96 459 - -
Vvi18g354 463 SUPERFAMILY PLP-dependent transferases 77 458 IPR015424 -
Vvi18g354 463 Gene3D Aspartate Aminotransferase, domain 1 75 459 IPR015422 GO:0003824
Vvi18g354 463 Gene3D - 105 362 IPR015421 GO:0003824
Vvi18g354 463 PANTHER AMINOTRANSFERASE 40 462 IPR019942 GO:0008483
Vvi18g354 463 Pfam Aminotransferase class I and II 94 450 IPR004839 GO:0009058|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g354 K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] - vvi:100267796 833.558
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g354 . . . . . . . . . . . . . . Sed11g2297 . . Bhi04g02497 Tan11g0087 Cmetu03g1388 . Hepe02g3438 . Lcy10g2329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00761 Cam11g0795 Cec11g0776 Cco11g0782 Clacu11g1063 Cmu11g0922 Cre11g1239 . . Chy03g00068 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010966 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31