Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g355 ATGTCGAAGGTTGCTAAATGGAAGCTTGAGAAGACAAAAGTAAAAGTAGTCTTCCGGTTACAATTCCATGCTACACATATTCCACCAACCGGATGGGATAAATTGTTTATATCTTTCATTCCCGCCGATTCTGGAAAGGCAACAGCAAAGACAACCAAGGCAAATGTGAGAAATGGGACCTGCAAATGGGCAGATCCTATCTATGAGACTACAAGACTTCTCCAAGATGCCAAAACCAAGCAGTATGATGAGAAACTCTATAAAATTATTGTGGCAATGGGTTCTTCACGGTCTAATATCCTGGGTGAGGCTAATATCAACCTTGCTGATTATTCTGATGCCCAAAAGCCTTCTACTGTTGCACTGCCTCTTCATGGATGCAATTCTGGAACTGTATTACATGTTACTGTGCAGCTGTTAACTTCTAAAACCGGGTTCAGAGAGTTTGAGCAGCAGAGGGAACTGAGAGAGAGAGGGTTGCAGACGAACACTGGACAAAATAGGCGTGATGGATCTAGTGGAGGAAAAGCATTATCATCCGAAGAAACTGTCAATGAACACATGGATAAGGTCAATGCAAGGGTTAGATTCAAACCAGAATCAACAGAGCTTCCTTCACTTGAAGAAGAGGGAGGATTAAATGAAGAATATTCAGACTCAGCTATTGGATTTGATGGCTCATCCAATACATCAGAAAGTTTATGTGCTGAAAAGCATGATACCTCCAGCACACATGAAATCGATAGCCTTAAGAGCACAATCTCTGGTGATTTAAATGGACTTTCCCACACTCAAAGTCCTCAGACAGAGAAAGGGGACCCATCAGATCAGAGGTTTTTGGCACAGGGAAGCAATGATTGGGTTCATGGATGGAGTTCAGACTATTCTGTGGATAATGACTTGGCAATTGCTTATGAAGAGAACAATAGGCTTAGAGGAAGCTTGGAAGTTGCGGAGTCTTCTATTATTGAGCTTAAGCTGGAGGTAAGCTCTCTACAAAGTCATGCTGATGAAATAGGTGTTGAAACACAAAAGTTTGCTAAGCAGCTTGCTGCTGAGATTGCTTCAGGAGAAGTTCTTGCCGAAGAGGTTTCTGTACTGAAATTAGAGTGTTCAAAACTCAAGGAGGACCTTGAACACCTCAGAAATTCTAAGTCAATTCCTGAATTTGCTAGCAGAGAAATTATTCGGACAGATCAGGATCATGGATTTGAAGATTCACAGCTGAGATGGCTAAAGGGACTTTTAAATATGGAGGACAAGATAAGAGAGCTTCAAACTAAGGCATGCCTTGGGTTCCATGAAAGGGAGTGCAGGTTCCTTCAGCCAGACTTAGAGGCACTGCTCCATGTTCTGCAGGATCTCAAACAAGGAACTGGACAAGCAATTTCTATGTTCGATGCTTTACCATCAGAAACTGCAAACATAAAGGAGATGAGAGAAAGCCAACAATTTGTGTCAGGAACTGGGTTTGATGCTGAATTGTATCAGCCTGAAGATTTGCTTCATTGCTTAGGTGTATCTGGCCTGGTTTCTCTTGTACCTGATTCTCTAGATGCTACCAATGCAATAAAAGACAAATTCTTTGAACTTCTAAGAGAGTTGGATGAGTCCAAAGCTGAACGGGAAAGCCTTGCAAGAAAAATGGACCAGATGGAGTGCTACTATGAAGCCCTTGTCCAGGAGCTTGAGGAAAACCAGAAGCAGATGCTGGGGGAATTGCAGAATCTCAGAACTGAGCACTCTACTTGCATGTACACAATTTCGTCCACGAAGGCTCAAATGGAGACAATGAGCCAAGACATGAATGAGCAGATCTTAAGATTTGCTGAGGACAGACGTGACTTGAATTCGCTTAACCAGGAGCTTGAAAGAAGGGCTATTACTTCAGAAGCAGCACTTAAAAGGGCACGTTTGAATTATTCGATAGCAGTGGATCAGTTACAAAAAGACCTCGAACTGCTTTCTTTCCAGGTTTTGTCTATGTTTGAGACTAATGAGAAGCTTGTGAAAGAAGCTTTTTCAGAAGCTTCACAACCGTCCTCCCGAGAGTGTCCAGAAACGGTGCAGAATCAGAACTTGGATTCAGAAAATCTTGACATTGCCAAACTCCTACAGTGCCATAATAAAAATGCAGGGGTAAAGAAACCATCCTTGGGTGGAGAAGTTCTTTTAGAGGACTTGAAAAGATCTCTTCACTTGCAGGAAGAGCTTTACCAGAAGGTCGAGGAAGAACTCTGTGAAATGCATTTGGTGAACATAGACCTGGATGTGTTTTCGAAGACTCTAAGAGAAACTTTGCTGGAAGCAAGTGCTGAGATTGCACTTATGAAAGAGAAAATAGATGAACTTAGTCAGCAGTTGGAGCTTTCAACTGAGTCCAAAGAGTTGTTACTGCTAAGGCTGCAGACTGCTATGGATGATGTTCGCATGCTGAATGAGTACAGGGAGAGTTGCATTGCAAAGTGCCATGATCTGGCTCTGCAAAATCAAATTTTAGAAGCAAATTTGGAAAGTGTTTCTAGTGAAAATTTTCGTCTTAGTCAGAAGATTGCAGAGTGGGATGCTCTGGTGATGAAATGCAGAAATTATGAGAGTAAATATGAAGCTTGTGCTGCTGAAAAAATGGAGTTGGCAAATTTATTAAAAGAGGAAGCTCTAGAAAATGGTGGTCTACAAAATGAAATTTCCTCTCTGCAGGAAGAGTTGAAAACTTCCAAAACTGAACTTGATGAGCTGGCTTCTGTGAAGGAAAGTCTGCAGCAAATTGTCAATTTTCTGCAAGATAAGTTGGGAAGTCTATTGGCATGTTATGATGCACAATTAAGTGGATTGCCTCTACAGAGTAAATCCACGTTTCAGGATTTCAAGTTTAAGGACTTCATGGATATTGGTCGATTCTCATTAAGCACAGTAAAATCAGAAACACTTGTCATGAGGCAGAAATTTGAACATGATATACAGGAGATGGTTAGTAAAGTGGATGCTTCCAATGCCCTAGTGCAAAGGCTTCAGTCGGAACTTGAGAACTTAGTTCTAAGAACAGGGACCTTGCTCAAGAAATCTTGGGGTTGGAAACTGTTACTGAAGAACTTGGAAAGAGTAAGTCGACTATAG 3117 41.55 MSKVAKWKLEKTKVKVVFRLQFHATHIPPTGWDKLFISFIPADSGKATAKTTKANVRNGTCKWADPIYETTRLLQDAKTKQYDEKLYKIIVAMGSSRSNILGEANINLADYSDAQKPSTVALPLHGCNSGTVLHVTVQLLTSKTGFREFEQQRELRERGLQTNTGQNRRDGSSGGKALSSEETVNEHMDKVNARVRFKPESTELPSLEEEGGLNEEYSDSAIGFDGSSNTSESLCAEKHDTSSTHEIDSLKSTISGDLNGLSHTQSPQTEKGDPSDQRFLAQGSNDWVHGWSSDYSVDNDLAIAYEENNRLRGSLEVAESSIIELKLEVSSLQSHADEIGVETQKFAKQLAAEIASGEVLAEEVSVLKLECSKLKEDLEHLRNSKSIPEFASREIIRTDQDHGFEDSQLRWLKGLLNMEDKIRELQTKACLGFHERECRFLQPDLEALLHVLQDLKQGTGQAISMFDALPSETANIKEMRESQQFVSGTGFDAELYQPEDLLHCLGVSGLVSLVPDSLDATNAIKDKFFELLRELDESKAERESLARKMDQMECYYEALVQELEENQKQMLGELQNLRTEHSTCMYTISSTKAQMETMSQDMNEQILRFAEDRRDLNSLNQELERRAITSEAALKRARLNYSIAVDQLQKDLELLSFQVLSMFETNEKLVKEAFSEASQPSSRECPETVQNQNLDSENLDIAKLLQCHNKNAGVKKPSLGGEVLLEDLKRSLHLQEELYQKVEEELCEMHLVNIDLDVFSKTLRETLLEASAEIALMKEKIDELSQQLELSTESKELLLLRLQTAMDDVRMLNEYRESCIAKCHDLALQNQILEANLESVSSENFRLSQKIAEWDALVMKCRNYESKYEACAAEKMELANLLKEEALENGGLQNEISSLQEELKTSKTELDELASVKESLQQIVNFLQDKLGSLLACYDAQLSGLPLQSKSTFQDFKFKDFMDIGRFSLSTVKSETLVMRQKFEHDIQEMVSKVDASNALVQRLQSELENLVLRTGTLLKKSWGWKLLLKNLERVSRL* 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3937856 3949317 + Vvi18g355 Vvi18g355 780058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g355 1038 MobiDBLite consensus disorder prediction 156 280 - -
Vvi18g355 1038 MobiDBLite consensus disorder prediction 221 237 - -
Vvi18g355 1038 MobiDBLite consensus disorder prediction 158 180 - -
Vvi18g355 1038 PANTHER SPORULATION-SPECIFIC PROTEIN 1 1013 - -
Vvi18g355 1038 Coils Coil 528 580 - -
Vvi18g355 1038 Coils Coil 725 745 - -
Vvi18g355 1038 Coils Coil 606 640 - -
Vvi18g355 1038 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1013 - -
Vvi18g355 1038 Coils Coil 767 794 - -
Vvi18g355 1038 MobiDBLite consensus disorder prediction 182 205 - -
Vvi18g355 1038 MobiDBLite consensus disorder prediction 247 280 - -
Vvi18g355 1038 Coils Coil 987 1014 - -
Vvi18g355 1038 Coils Coil 882 930 - -
Vvi18g355 1038 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 140 IPR019448 -
Vvi18g355 1038 Coils Coil 364 384 - -
Vvi18g355 1038 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g355 - - - vvi:100255792 1873.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g355 . . . . . . . . Cmo04g02413 . . . . . . . . . . . . . . . . . . . . . . Cone4ag1360 Cone7ag1573 . . . . . . . . . . . . . . . . . . . Car04g02229 . Cpe01g02004 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005592 0 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 2 40