Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g357 ATGGCGGGAGAAGAGCTGATTGAGCTTAAGTTTAGGCTTGCTGATGGCACCGACATCGGTCCAAACAAGTATAATCCAACTACCTCTGTGGGATCTCTCAAAGAAAAGATACTTGCACAATGGCCTAAAGACAAAGAAAATGGTCCAAAGACTATCAACGACATGAAGCTTATTAACGCAGGAAAGATACTTGAAAACAACAGAACACTTGCTGAGTCCAGACTCCTAGTTGGTGAACTTCCAGGAGGGGTCATCACAATGCATGTTGTCGTTCGTCCTCCTTTGTCAGACAAAAACACTGAGAAACAGCAGGATGATTCACCAAAGAAGAGCCGGTGTTCGTGCTCTATCCTATAA 357 43.98 MAGEELIELKFRLADGTDIGPNKYNPTTSVGSLKEKILAQWPKDKENGPKTINDMKLINAGKILENNRTLAESRLLVGELPGGVITMHVVVRPPLSDKNTEKQQDDSPKKSRCSCSIL* 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3956773 3960560 - Vvi18g357 Vvi18g357 780060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g357 118 MobiDBLite consensus disorder prediction 93 118 - -
Vvi18g357 118 PIRSF MUB 1 118 IPR017000 -
Vvi18g357 118 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 118 - -
Vvi18g357 118 CDD Ubl_MUBs_plant 6 94 - -
Vvi18g357 118 Gene3D - 1 100 - -
Vvi18g357 118 SUPERFAMILY Ubiquitin-like 3 95 IPR029071 -
Vvi18g357 118 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 118 IPR040015 -
Vvi18g357 118 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Vvi18g357 118 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 116 IPR039540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g357 - - - vvi:100243670 239.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1359 Cone7ag1574 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003176 2 4 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 4 3 51