Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g36 ATGGATATAGGCGAGATGGAGGATGGCCAAAAGATGGAGCGAGAGTCGGATATCAACCTGATTGATGCCAAAATCGGAGAACAAGAGCCTCCTCCCTCGGCGGAGGATAAAGACCCCGGTGAGAATGTGCAATCCCCTCCTCCTCCCCCCTCGGCTAAGGATGAAAACCCTGGTGAGAATTTGAAATCGGCTCCTTCTCAGGCAGCCTCTGATGTTAAGAGTGATGAATCACCCATTACCGATCATCCAACCGATGTTAAAACCATTGCTGAGGTTGAAACCAATGTTGATGCTTCTGGTGTTAATGATAATGCCCCGAGAGCAAATGAGCTTGAAGCTGTGACACCCCAGCCACTAGCAAAGTCTGCTATTGCAAAAGATGAAGATGGGAGTGAAGGGGAGTTGAAGAATGAGTTCAATGATAAAGCGGTTGCTGATGCCATCGAATTGGGGACAGGTGAGGAGGTTGCCGATTTTGCTAAGGAGGTGGAGAGTTTCTATAGGGAGCATTCCCTGGATTTTAAACACCCCAAGTTTTACGGAGAGCCATTAGATTTGCTAAAGTTATGGAAAGCTGTAACTAGATTGGGAGGCTATGATCAGGTGACTGCATCCAAGTTGTGGCGACAAGTGGGAGACTCTTTCCATCCCCCCAAGACCTGCACTACAGTCTCTTGGACATTCCGCATTTTCTATGAGAAGGCACTTCTGGAATATGAAAGGCATAAAAGGAACAGGGGTGAGCTTCAACCCTCGTCTGTACCCATCTCTGAAACAAAAACTGAAGAAAAAGAGGGAAGTGGTTACCAAGCTTCAGGAACAGGCAGGGCACGAAGGGATGCTGCAGCTCGTGCTATGCAGGGTTGGCATGTTCAGCGTCTCTTTGGATATGGTGAGGTTGGTGAGCCAATTATCAAGGATAAGAGCTTCAATTCTGCACAAAAGCGTGAAAGACCACTCAAAAGCATTGGTTTACATAAACACAAGAAACCAACTCTTATGGAGGATGTCGAAAAAGCTGAAGCAGCTAAGCAGCTGGATGCTACAGTTGCTGATGTTGGAGCTCCTGCTGATTGGGTGAAGATCAATGTGCGGGAAACTAAAGATTGCTTCGAGGTATATGCTCTAGTCCCTGGGCTTCTGCGTGAGGAGGTGCGGGTTCAATCTGATCCAGCTGGACGCCTAGTCATAACGGGTCAGCCAGAGCAGGTTGACAATCCTTGGGGGATAAAACCCTTCAAAAAGGTGGTGAGCTTACCTGCAAGAATTGATCCACTGCAGACATCTGCTGTTGTTAGCTTGCACGGCCGACTCTATGTTCGAGTGCCTTTTGAGAAGGGATCAGGTTGA 1350 47.93 MDIGEMEDGQKMERESDINLIDAKIGEQEPPPSAEDKDPGENVQSPPPPPSAKDENPGENLKSAPSQAASDVKSDESPITDHPTDVKTIAEVETNVDASGVNDNAPRANELEAVTPQPLAKSAIAKDEDGSEGELKNEFNDKAVADAIELGTGEEVADFAKEVESFYREHSLDFKHPKFYGEPLDLLKLWKAVTRLGGYDQVTASKLWRQVGDSFHPPKTCTTVSWTFRIFYEKALLEYERHKRNRGELQPSSVPISETKTEEKEGSGYQASGTGRARRDAAARAMQGWHVQRLFGYGEVGEPIIKDKSFNSAQKRERPLKSIGLHKHKKPTLMEDVEKAEAAKQLDATVADVGAPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGIKPFKKVVSLPARIDPLQTSAVVSLHGRLYVRVPFEKGSG* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 447135 470607 + Vvi18g36 Vvi18g36 779739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g36 449 SMART bright_3 154 245 IPR001606 GO:0003677
Vvi18g36 449 CDD ARID 157 240 - -
Vvi18g36 449 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 348 449 IPR002068 -
Vvi18g36 449 SMART ARID_2 150 240 - -
Vvi18g36 449 SUPERFAMILY ARID-like 148 252 IPR036431 GO:0003677
Vvi18g36 449 Pfam ARID/BRIGHT DNA binding domain 158 240 IPR001606 GO:0003677
Vvi18g36 449 ProSiteProfiles ARID domain profile. 153 244 IPR001606 GO:0003677
Vvi18g36 449 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 56 446 - -
Vvi18g36 449 Pfam Hsp20/alpha crystallin family 364 445 IPR002068 -
Vvi18g36 449 MobiDBLite consensus disorder prediction 1 87 - -
Vvi18g36 449 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 56 446 IPR045147 GO:0006357
Vvi18g36 449 MobiDBLite consensus disorder prediction 60 74 - -
Vvi18g36 449 SUPERFAMILY HSP20-like chaperones 359 444 IPR008978 -
Vvi18g36 449 Gene3D - 336 448 IPR008978 -
Vvi18g36 449 CDD ACD_sHsps_p23-like 364 443 - -
Vvi18g36 449 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g36 449 Gene3D - 154 253 IPR036431 GO:0003677
Vvi18g36 449 MobiDBLite consensus disorder prediction 247 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g36 - - - vvi:100265075 890.952
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g36 . . . . . . . . . . Cma01g02043 . Car01g01610 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01577 . . Bma01g00689 . . Cmo01g02101 . . . . . . Cpe02g00012 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g902 . 49 388 ARID Transcription Factor Family AT1G04880 63.0 1.4e-109 393.7
Vvi18g36 . 149 416 ARID Transcription Factor Family AT1G20910 65.3 8.6e-95 344.4
Vvi4g1345 . 1 256 ARID Transcription Factor Family AT1G20910 63.2 2.4e-89 326.2
Vvi18g149 . 20 303 ARID Transcription Factor Family AT1G76110 51.8 4.7e-81 298.5
Vvi18g36 . 139 446 ARID Transcription Factor Family AT1G76510 68.3 3.7e-115 412.1
Vvi4g1345 . 1 286 ARID Transcription Factor Family AT1G76510 66.3 6.3e-107 384.8
Vvi11g16 ECH 1 738 ARID Transcription Factor Family AT3G43240 69.3 1.9e-305 1045.0
Vvi9g26 ECH 1 744 ARID Transcription Factor Family AT3G43240 66.5 1.4e-292 1002.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14322 PF00011 HSP20 3.60E-06 CL0190 Vvi TR