Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g36 ATGGATATAGGCGAGATGGAGGATGGCCAAAAGATGGAGCGAGAGTCGGATATCAACCTGATTGATGCCAAAATCGGAGAACAAGAGCCTCCTCCCTCGGCGGAGGATAAAGACCCCGGTGAGAATGTGCAATCCCCTCCTCCTCCCCCCTCGGCTAAGGATGAAAACCCTGGTGAGAATTTGAAATCGGCTCCTTCTCAGGCAGCCTCTGATGTTAAGAGTGATGAATCACCCATTACCGATCATCCAACCGATGTTAAAACCATTGCTGAGGTTGAAACCAATGTTGATGCTTCTGGTGTTAATGATAATGCCCCGAGAGCAAATGAGCTTGAAGCTGTGACACCCCAGCCACTAGCAAAGTCTGCTATTGCAAAAGATGAAGATGGGAGTGAAGGGGAGTTGAAGAATGAGTTCAATGATAAAGCGGTTGCTGATGCCATCGAATTGGGGACAGGTGAGGAGGTTGCCGATTTTGCTAAGGAGGTGGAGAGTTTCTATAGGGAGCATTCCCTGGATTTTAAACACCCCAAGTTTTACGGAGAGCCATTAGATTTGCTAAAGTTATGGAAAGCTGTAACTAGATTGGGAGGCTATGATCAGGTGACTGCATCCAAGTTGTGGCGACAAGTGGGAGACTCTTTCCATCCCCCCAAGACCTGCACTACAGTCTCTTGGACATTCCGCATTTTCTATGAGAAGGCACTTCTGGAATATGAAAGGCATAAAAGGAACAGGGGTGAGCTTCAACCCTCGTCTGTACCCATCTCTGAAACAAAAACTGAAGAAAAAGAGGGAAGTGGTTACCAAGCTTCAGGAACAGGCAGGGCACGAAGGGATGCTGCAGCTCGTGCTATGCAGGGTTGGCATGTTCAGCGTCTCTTTGGATATGGTGAGGTTGGTGAGCCAATTATCAAGGATAAGAGCTTCAATTCTGCACAAAAGCGTGAAAGACCACTCAAAAGCATTGGTTTACATAAACACAAGAAACCAACTCTTATGGAGGATGTCGAAAAAGCTGAAGCAGCTAAGCAGCTGGATGCTACAGTTGCTGATGTTGGAGCTCCTGCTGATTGGGTGAAGATCAATGTGCGGGAAACTAAAGATTGCTTCGAGGTATATGCTCTAGTCCCTGGGCTTCTGCGTGAGGAGGTGCGGGTTCAATCTGATCCAGCTGGACGCCTAGTCATAACGGGTCAGCCAGAGCAGGTTGACAATCCTTGGGGGATAAAACCCTTCAAAAAGGTGGTGAGCTTACCTGCAAGAATTGATCCACTGCAGACATCTGCTGTTGTTAGCTTGCACGGCCGACTCTATGTTCGAGTGCCTTTTGAGAAGGGATCAGGTTGA 1350 47.93 MDIGEMEDGQKMERESDINLIDAKIGEQEPPPSAEDKDPGENVQSPPPPPSAKDENPGENLKSAPSQAASDVKSDESPITDHPTDVKTIAEVETNVDASGVNDNAPRANELEAVTPQPLAKSAIAKDEDGSEGELKNEFNDKAVADAIELGTGEEVADFAKEVESFYREHSLDFKHPKFYGEPLDLLKLWKAVTRLGGYDQVTASKLWRQVGDSFHPPKTCTTVSWTFRIFYEKALLEYERHKRNRGELQPSSVPISETKTEEKEGSGYQASGTGRARRDAAARAMQGWHVQRLFGYGEVGEPIIKDKSFNSAQKRERPLKSIGLHKHKKPTLMEDVEKAEAAKQLDATVADVGAPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGIKPFKKVVSLPARIDPLQTSAVVSLHGRLYVRVPFEKGSG* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 447135 470607 + Vvi18g36 Vvi18g36 779739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g36 449 SMART bright_3 154 245 IPR001606 GO:0003677
Vvi18g36 449 CDD ARID 157 240 - -
Vvi18g36 449 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 348 449 IPR002068 -
Vvi18g36 449 SMART ARID_2 150 240 - -
Vvi18g36 449 SUPERFAMILY ARID-like 148 252 IPR036431 GO:0003677
Vvi18g36 449 Pfam ARID/BRIGHT DNA binding domain 158 240 IPR001606 GO:0003677
Vvi18g36 449 ProSiteProfiles ARID domain profile. 153 244 IPR001606 GO:0003677
Vvi18g36 449 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 56 446 - -
Vvi18g36 449 Pfam Hsp20/alpha crystallin family 364 445 IPR002068 -
Vvi18g36 449 MobiDBLite consensus disorder prediction 1 87 - -
Vvi18g36 449 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 56 446 IPR045147 GO:0006357
Vvi18g36 449 MobiDBLite consensus disorder prediction 60 74 - -
Vvi18g36 449 SUPERFAMILY HSP20-like chaperones 359 444 IPR008978 -
Vvi18g36 449 Gene3D - 336 448 IPR008978 -
Vvi18g36 449 CDD ACD_sHsps_p23-like 364 443 - -
Vvi18g36 449 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g36 449 Gene3D - 154 253 IPR036431 GO:0003677
Vvi18g36 449 MobiDBLite consensus disorder prediction 247 277 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14322 PF00011 HSP20 3.60E-06 CL0190 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g36 - - vvi:100265075 890.952