Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g361 ATGTCTTCGCCATATCCAATTCTTGACAATCGACCAATTGATCAATGGAAAGTGACAGAGTTGAAGGAAGAGCTCAAGAGGCGGAAATTAAAGATGACTGGGTTGAAAGATGATTTGATAAAGCGGTTGAATGAAGCAATTCTCATTGAGAGGGAGGCTTTGGAGAGAGAAGCAAACAAAGCTGTTGTTTGTGAGCCTGAACCTGTGGTTAAGGGTGGGGATATGGGGGCAAAGCCTAATAATCATGTTGAAATGACTGGAGATACTGGGAATCCTGGTAGAAACAAAAGTGAAAAGTTGGATGATTTTGTTCGTGTGGTTGAGATTGTTGATGGTCCAACTGAGCTGGGTACTGGGTCTGCCACCACGATTGGGGAACTGGTGGTTTCAGAGGCTTCCATGGAAACTAGTGGAATGGTTGACAAGGCTGTGATAGTCCAGATTGCATCTAAAGTGAAATCTTCTGAAAACGAGGAAGTGAAATCTGCTGAAAACGATGAAGTGAAATCTGCTGAAAACGATGAAGTGAAATCGGCAGAAAATGATGAAATCAAGACAGAGAGTGAGAATTCAAAGCCTCCCCAAATAGATGCGGTGCCTAATGTTTCCGGTCCAAACAACCAGGTATATGAGGTCAGCCCTGTTTTAGGGTTTCAAGTAGAGTCTGAATCTATTTCTAGTGATTCTGTGTCAATTAATGAAAAGAATGAACTAAAGGATAATTTAAATGCTGATAATGTCAATTTAGAATTAGAAGTTGTTAAGACGGAGATGGTGCAACCATCATCTCAAGAAGTCCCTCCCAGTGGTGGCAATTTACACCCACTGGATGATCAAAAGCCACGTGAGAACCAGGACTCTGTAGAGGAAACAGATGACAACAAATCCAAGCATGTGGATTTTTGTGGAAAAAACGATGATGCAGGTGGGGGTTCACCTGTAAAATTGAACTTAGACCAACATACAGCTAATAATTTAGTGGATGATGGTGTATTGGAGAATAAGCAAATTGATTCAAATCACATATCCAATGAAGTGGAAGACAAGATTGAGCTTACTGAAATGTCTTTTACAAAAGACAAAAATCCTGTTCATGACGTTGTGCTTGATTTGTATCCCGAAGAGATGGAAACATCTGCAGAAAAGAAGAATAGCATCACCGCTCCTTCTGAGGAAAGTAACTTACAAGATGACAATAAAGCTAAATATTTGGATCTTCACAAGGGAAGTGAAATGGCAGATGGGGGGTCACTGGAGAAATTAATTTTGGATCATTCTTCAGCAGATGATTCTATGGAGGAGGATGCATTGGAGACAAAGCAGACTGACTCAAATCATAATTCTAGTGAAGTGGGGAATAAGATTGAGATGACTGAAGTTACTGGTTCCAAGGTGGGAGGTAAAGTTGATGACGTGGGGACTGATTTATCTTCTGACAGGACGGTGCCTCCTTCTGAAAAGAAAGATAATGTTGCCACTCTGGAGAAAAGGAAGTTTCAAGATGAAGGAGTTGGGGTCAATGAAACTCCGAAGAGGCAGCGTAGGTGGAATAATGAAAGCCTCAAAATTCCTGAGCCACAAAGCTCTAATCTTACACCGTCTACAACACCTAAGGATTCATTTCATGCTTCAAGACTGAAGCGCAACCTCACAAGGTCTGACTCTACAGTTAGTGGAGATGCACCAAAGGAACGAATTGTACCGATGTCACCAAAACCTCCAACAAATTCTCTTAGAATTGATCGCTTTTTGCGTCCTTTTACCCTGAAAGCTGTGCAAGAACTTCTAGCTAAAACTGGGAATGTCTGCAGTTTCTGGATGGACCATATTAAAACCCATTGCTATGTCACATACTCATCAGTAGAAGAAGCTAAAGAAACGCGAAATGCTCTCTACAATCTTCAATGGCCTCCAAATGGAGGGCGCCTCCTAGTGGCTGAGTATGTTGATCCCCAAGAAGTGAAGTCACGGGTAGATGCCCCACCCCAATCTCCAGCCACACCAGTTACATGGCCTCAGGCAACAACTTCCACCCCCACCTCCCGTACTTCAGCCGCCACCTGTTTCTAA 2070 42.46 MSSPYPILDNRPIDQWKVTELKEELKRRKLKMTGLKDDLIKRLNEAILIEREALEREANKAVVCEPEPVVKGGDMGAKPNNHVEMTGDTGNPGRNKSEKLDDFVRVVEIVDGPTELGTGSATTIGELVVSEASMETSGMVDKAVIVQIASKVKSSENEEVKSAENDEVKSAENDEVKSAENDEIKTESENSKPPQIDAVPNVSGPNNQVYEVSPVLGFQVESESISSDSVSINEKNELKDNLNADNVNLELEVVKTEMVQPSSQEVPPSGGNLHPLDDQKPRENQDSVEETDDNKSKHVDFCGKNDDAGGGSPVKLNLDQHTANNLVDDGVLENKQIDSNHISNEVEDKIELTEMSFTKDKNPVHDVVLDLYPEEMETSAEKKNSITAPSEESNLQDDNKAKYLDLHKGSEMADGGSLEKLILDHSSADDSMEEDALETKQTDSNHNSSEVGNKIEMTEVTGSKVGGKVDDVGTDLSSDRTVPPSEKKDNVATLEKRKFQDEGVGVNETPKRQRRWNNESLKIPEPQSSNLTPSTTPKDSFHASRLKRNLTRSDSTVSGDAPKERIVPMSPKPPTNSLRIDRFLRPFTLKAVQELLAKTGNVCSFWMDHIKTHCYVTYSSVEEAKETRNALYNLQWPPNGGRLLVAEYVDPQEVKSRVDAPPQSPATPVTWPQATTSTPTSRTSAATCF* 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3980568 3988108 - Vvi18g361 Vvi18g361 780064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g361 689 MobiDBLite consensus disorder prediction 654 689 - -
Vvi18g361 689 Gene3D SAP domain 2 58 IPR036361 -
Vvi18g361 689 SMART sap_9 13 47 IPR003034 -
Vvi18g361 689 MobiDBLite consensus disorder prediction 71 97 - -
Vvi18g361 689 Coils Coil 40 60 - -
Vvi18g361 689 MobiDBLite consensus disorder prediction 442 456 - -
Vvi18g361 689 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 399 - -
Vvi18g361 689 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 396 680 - -
Vvi18g361 689 SUPERFAMILY RNA-binding domain, RBD 569 659 IPR035979 GO:0003676
Vvi18g361 689 MobiDBLite consensus disorder prediction 258 313 - -
Vvi18g361 689 MobiDBLite consensus disorder prediction 191 207 - -
Vvi18g361 689 MobiDBLite consensus disorder prediction 669 689 - -
Vvi18g361 689 MobiDBLite consensus disorder prediction 378 398 - -
Vvi18g361 689 CDD RRM_ACINU 575 659 IPR034257 -
Vvi18g361 689 MobiDBLite consensus disorder prediction 481 519 - -
Vvi18g361 689 MobiDBLite consensus disorder prediction 520 540 - -
Vvi18g361 689 Pfam SAP domain 14 47 IPR003034 -
Vvi18g361 689 MobiDBLite consensus disorder prediction 428 574 - -
Vvi18g361 689 MobiDBLite consensus disorder prediction 153 207 - -
Vvi18g361 689 SUPERFAMILY SAP domain 12 47 IPR036361 -
Vvi18g361 689 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 396 680 - -
Vvi18g361 689 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 399 - -
Vvi18g361 689 Coils Coil 232 252 - -
Vvi18g361 689 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Vvi18g361 689 MobiDBLite consensus disorder prediction 154 190 - -
Vvi18g361 689 Coils Coil 18 38 - -
Vvi18g361 689 MobiDBLite consensus disorder prediction 276 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g361 K12875 ACIN1, ACINUS; apoptotic chromatin condensation inducer in the nucleus - vvi:100248897 1298.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1118 Vvi18g361 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g361 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001770 2 2 3 2 2 1 4 1 1 2 1 1 3 2 2 2 1 3 4 1 2 2 2 2 2 1 2 6 7 3 69