Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g362 ATGGCGTACCTCCTCGTCGTCGATGCTGCCATTGCTGTCACATTTTCGTCAAAGCTCATTCATCGCTTCTCCGACGAGGCCAAGGCGTTTTTCGTTTCCAGGAACGGCAATATCTTTGCTGATTCGTGGCCGAAGAAGAGGAGCTTTGATTACTACAGGTTGCTTCTGAGTAGCGACTTGAAGCGCCAGAAGTTGAAGCTGGGAGCGGAATATCAGCTCTTGTTTCCATCTGAAGGAAGCGACGCTCTGTTCTTGGGTAATGAATTTGGCTGGTTACATTACACTTGGATTGATATAGGAACACCGAATGTCTCTTTTCTTGTTGCATTGGATGCTGGGAGCGATTTGCTTTGGGTTCCTTGTGATTGTATGCAATGTGCTCCCTTGTCTGCCAGCTACTATGATAGATTGGGTAGAGATCTGAATGAGTATAGCCCATCTTTATCAAGCACCAGCAAGCCCCTATCTTGCAATGATCAATTATGTGAACTGGGTTCAGACTGCAAAAGTTCAAAGGACCCTTGCCCTTACCTTGCTAGCTACTATTCAGAGAATACCTCAAGTTCTGGTTTGCTGATCGAGGACCGACTACATTTGGCACCATTCAGTGAACATGCATCCCGAAGTTCGGTGTGGGCTTCAGTCATTATAGGCTGTGGTAGGAAACAAAGTGGTGCTTTTTCAGATGGAGCGGCTCCTGATGGTCTTATGGGATTGGGACCTGGGGACCTTTCAGTTCCTAGTTTGCTAGCAAAAGCAGGATTGGTTCGAAATACTTTCTCAATTTGTTTTGACGATAATCATTCTGGGACAATTTTGTTTGGTGACCAAGGACTTGTGACCCAAAAATCTACATCATTTGTGCCTTTAGAAGGAAAATTTGTTACCTATCTTATTGAGGTGGAGGGTTACCTCGTTGGGAGTTCTTCTCTTAAGACAGCAGGATTTCAAGCTCTGGTTGACAGTGGAACATCATTCACATTTCTTCCATATGAAATTTATGAAAAAATTGTTGTGGAGTTTGACAAACAAGTGAATGCTACAAGGTCCAGCTTCAAAGGGTCCCCCTGGAAGTACTGTTATAATTCTAGTTCACAGGAATTGCTCAACATTCCTACTGTGACACTTGTGTTTGCTATGAACCAAAGTTTTATAGTACATAATCCTGTTATTAAGTTAATCTCGGAGAATGAGGAATTCAATGTTTTCTGTTTACCTATCCAGCCTATACATGAAGAATTTGGCATCATTGGCCAAAACTTCATGTGGGGTTATCGCATGGTGTTCGATAGGGAAAATTTGAAGCTGGGTTGGTCTACTTCCAATTGTCAAGATATAACCGATGGTAAAATAATGCATTTAACACCACCTCCAAATGATAGATCTCCAAACCCACTGCCAACCAATCAGCAACAGATGACCCCTAGTAGGCATGCTGTTGCTCCTGCTGTTGCTGGAAGGACTCCCGCAAAATCTGCTGCAGTGTCACCTCTTGCTTTTCCCTACTGGCTCTGTTTGATGAATTTGCTGCTAGTGTTGATGCGTTTGTTTGTTCTAGATGTCTAA 1566 43.36 MAYLLVVDAAIAVTFSSKLIHRFSDEAKAFFVSRNGNIFADSWPKKRSFDYYRLLLSSDLKRQKLKLGAEYQLLFPSEGSDALFLGNEFGWLHYTWIDIGTPNVSFLVALDAGSDLLWVPCDCMQCAPLSASYYDRLGRDLNEYSPSLSSTSKPLSCNDQLCELGSDCKSSKDPCPYLASYYSENTSSSGLLIEDRLHLAPFSEHASRSSVWASVIIGCGRKQSGAFSDGAAPDGLMGLGPGDLSVPSLLAKAGLVRNTFSICFDDNHSGTILFGDQGLVTQKSTSFVPLEGKFVTYLIEVEGYLVGSSSLKTAGFQALVDSGTSFTFLPYEIYEKIVVEFDKQVNATRSSFKGSPWKYCYNSSSQELLNIPTVTLVFAMNQSFIVHNPVIKLISENEEFNVFCLPIQPIHEEFGIIGQNFMWGYRMVFDRENLKLGWSTSNCQDITDGKIMHLTPPPNDRSPNPLPTNQQQMTPSRHAVAPAVAGRTPAKSAAVSPLAFPYWLCLMNLLLVLMRLFVLDV* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3994149 4000643 + Vvi18g362 Vvi18g362 780065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g362 521 SUPERFAMILY Acid proteases 89 447 IPR021109 -
Vvi18g362 521 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 318 329 IPR001969 GO:0004190|GO:0006508
Vvi18g362 521 Gene3D Acid Proteases 277 448 IPR021109 -
Vvi18g362 521 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 466 - -
Vvi18g362 521 PANTHER ASPARTYL PROTEASES 3 466 IPR001461 GO:0004190|GO:0006508
Vvi18g362 521 PRINTS Pepsin (A1) aspartic protease family signature 99 119 IPR001461 GO:0004190|GO:0006508
Vvi18g362 521 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Vvi18g362 521 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Vvi18g362 521 Pfam Xylanase inhibitor C-terminal 313 439 IPR032799 -
Vvi18g362 521 Pfam Xylanase inhibitor N-terminal 94 276 IPR032861 -
Vvi18g362 521 ProSiteProfiles Peptidase family A1 domain profile. 93 439 IPR033121 -
Vvi18g362 521 CDD pepsin_like 97 438 IPR034164 -
Vvi18g362 521 Gene3D Acid Proteases 86 276 IPR021109 -
Vvi18g362 521 MobiDBLite consensus disorder prediction 455 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g362 - - - vvi:100253991 1005.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1114 Vvi18g362 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00282 . . . . . . . . . . . . . . . . . Cpe02g00391 . . . . . . . . . . . . . . Lsi08g00357 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001236 2 5 2 2 2 2 3 2 2 1 2 1 3 2 2 3 1 2 3 1 2 2 2 2 2 2 2 8 9 2 76