Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g364 ATGGGTCGTGGTAAGCAAGAGATGAGGAGAATAGAAGATAAAGCAACTCGGCAGGTTTCATTTTCAAGGCGGAAGAAGGGACTCATTAAGAAGGCGTACGAGCTTTCTGTACTCTGTGATATTGATATTGCACTGATCATGTTCCCTCCCTCAGGCCGTCTCACTCAATTTTCGGGCAAAAAAAGGATGGAGGAAGTTTTCACTCGTTACATGCATCTCACAGACGAAGAAAGAGAAGAGTATGCTCTTGAATTACTTGTCCAGTTTGCATTTGAAAGAGTTTGGAGTTCTTAA 294 42.52 MGRGKQEMRRIEDKATRQVSFSRRKKGLIKKAYELSVLCDIDIALIMFPPSGRLTQFSGKKRMEEVFTRYMHLTDEEREEYALELLVQFAFERVWSS* 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4014839 4015257 + Vvi18g364 Vvi18g364 780067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g364 97 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 79 - -
Vvi18g364 97 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Vvi18g364 97 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g364 97 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g364 97 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g364 97 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g364 97 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g364 97 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g364 97 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 79 - -
Vvi18g364 97 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1111 Vvi18g364 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14323 PF00319 SRF-TF 1.30E-23 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g364 - - vvi:109121591 175.252