Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g366 ATGGCCAGTTTGCTTCAGGGTTCGTGCTCTTCCACTAGGCCGGCAATTCACAGTTTGGGGGTCTCTTCAGATGGCGACACTTCCAGATCAATTTCTTTCTCTTCTCAACTCAACAATCTCTGCTTCAAATCATTGGAGAAAAGGTTTCATGTGAAGCGCCTTAGAATGGGTACCCTTGTAAGGGCAGAGAGCATATCCAAGCAAGTGGAGGTTGACATCTCATTGAGTCCAAGAGTAAATTCTGTAAAGCCTTCAAAAACAATTGCTGTAACTGATTTGGCAACTGCACTTGTGCAAGCTGGAGTTCCAGTTATACGGTTAGCAGCAGGAGAACCTGATTTTGATACCCCTACTGTTGTTGCTGAGGCTGGGATAAATGCAATTCGTGAAGGTTATACAAGGTACACACCCAATGCAGGCACTCTGGAGCTCCGCACTGCAATTTGTCATAAACTAAAGGAGGAGAATGGACTAACTTATACCCCTGATCAAATATTGGTCAGCAATGGAGCCAAGCAGTCTGTACTTCAAGCTGTGCTTGCAGTTTGTTCACCGGGTGATGAGGTTATTATTCCTGGTCCATTTTACGTAAGCTACCCTGAAATGGCAAGGTTAGCTGATGCTACGCCTGTAATTCTTCCTACACTCATCTCCAACAATTTTCGCTTGGATCCAGAGGTTCTTAAGTCCACAATCAGTGAAAAGTCAAGGGTGCTGATTCTTTGTTCACCATCAAATCCAACAGGATCTGTATATCCCAAGAAACTCCTAGAGGAGATTGCTGATATCGTAGCAAAACATCCTAGACTTCTGGTAATAGCTGATGAGATTTATGAGCATATTATTTATGCACCAGCCATTCACACAAGCTTTGCGTCTTTACCAGGCATGTGGGAGAGAACACTTACCGTCAATGGATTTTCAAAGACTTTTGCAATGACTGGTTGGCGACTTGGATACCTAGCTGGTCCAAAACACTTTGTGGCAGCATGTGGAAAAATTCAGAGCCAGGTCACCTCAGGTGCTAGCAGCATTTCACAGAAAGCAGGGGTTGCGGCTTTGGGATTGGGGTACCGTGGAGGGGAAGCAGTTGCCAAAATGGTAAAAGCATTTGAAGAGCGACGGGATTTCTTGGTTGAAAGCTTTAGAGAGTTGGGGGGTGTTAAGATATCAGAGCCTCAGGGTGCATTCTATCTATTCCTTGATTTTAGCTCCTATTATGGAGCAGAAGCAGAAGGTTATGGTATCATCAAGGACTCAGAATCTCTATGCAAATATCTGCTTGATAAGGCACAGGTTGCGCTGGTCCCAGGAGATGCATTCGGGGATGACAAATGCATCCGCATCTCCTACGCTGCATCCATGTCAAATTTGCAGGCAGCTATGGAAAGAATCAAGGGAGCAATTGTGCACCTCAAGGCTACCGTCCCTGCCTGA 1437 45.3 MASLLQGSCSSTRPAIHSLGVSSDGDTSRSISFSSQLNNLCFKSLEKRFHVKRLRMGTLVRAESISKQVEVDISLSPRVNSVKPSKTIAVTDLATALVQAGVPVIRLAAGEPDFDTPTVVAEAGINAIREGYTRYTPNAGTLELRTAICHKLKEENGLTYTPDQILVSNGAKQSVLQAVLAVCSPGDEVIIPGPFYVSYPEMARLADATPVILPTLISNNFRLDPEVLKSTISEKSRVLILCSPSNPTGSVYPKKLLEEIADIVAKHPRLLVIADEIYEHIIYAPAIHTSFASLPGMWERTLTVNGFSKTFAMTGWRLGYLAGPKHFVAACGKIQSQVTSGASSISQKAGVAALGLGYRGGEAVAKMVKAFEERRDFLVESFRELGGVKISEPQGAFYLFLDFSSYYGAEAEGYGIIKDSESLCKYLLDKAQVALVPGDAFGDDKCIRISYAASMSNLQAAMERIKGAIVHLKATVPA* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4035263 4040612 + Vvi18g366 Vvi18g366 780069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g366 478 SUPERFAMILY PLP-dependent transferases 75 468 IPR015424 -
Vvi18g366 478 Gene3D Aspartate Aminotransferase, domain 1 88 463 IPR015422 GO:0003824
Vvi18g366 478 Pfam Aminotransferase class I and II 103 465 IPR004839 GO:0009058|GO:0030170
Vvi18g366 478 CDD AAT_like 105 466 - -
Vvi18g366 478 PANTHER GLUTAMATE-OXALOACETATE TRANSAMINASE5 28 475 - -
Vvi18g366 478 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 306 319 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vvi18g366 478 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 28 475 - -
Vvi18g366 478 Gene3D - 134 356 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g366 K15849 PAT, AAT; bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [EC:2.6.1.1 2.6.1.78 2.6.1.79] - vvi:104882479 933.324
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1096 Vvi18g366 ECH
Vvi7g1098 Vvi18g366 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00291
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004943 3 3 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 4 1 3 40