Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g37 ATGAAGCTATATACAAGGGCGCTGCATTATGAGGTTATTCAGTTGAATGCAAATGATCATTGCTTGGGTTACAGTTTGTTGTTCATCTTCTGGTTTTGGGGTGTTTGGATTGTATTGAGAGATCAGATCGAGGCAGAAGGAGAGGAAGGAAAAAGAAAACTGGCAAATAATTGGTGGGAGAGAGTAGATGTGGGGATGGAGGGTTATGAACCAGGCTCAGGTTCTCGCTACGTCCACCAGCTACTCGGACCTGAACTGCACTTGCAGAGACCGTCATCGCTTCCACAACATCAAGCCACTCAACAACCATCGGATTCTAGGGACGAGTCACCAGATGATCAGGAGCAGAGGGCGGACACCGAGGAGGCCGCCGCTGCTAGTTCTGGTGGAGCCACCACCTCTTCAAATCGCCGCCCTCGAGGTCGTCCTCCTGGCTCCAAGAACAAGCCCAAGCCACCCATAATCGTAACGCGCGATAGCCCAAATGCCCTCCGGTCGCATGTACTTGAAGTTGCCGCTGGCGCTGACGTCATGGAGAGTGTGTTGAATTACGCCCGGCGCCGTGGGAGAGGCGTATGTGTTCTCAGCGGTGGCGGCACAGTCATGAACGTGACGCTGCGTCAGCCTGCGGTTTATTTAATTATGCATGTGTTTCCCTCTCTTCTGCAGTCAGCATTTCTATAG 684 52.19 MKLYTRALHYEVIQLNANDHCLGYSLLFIFWFWGVWIVLRDQIEAEGEEGKRKLANNWWERVDVGMEGYEPGSGSRYVHQLLGPELHLQRPSSLPQHQATQQPSDSRDESPDDQEQRADTEEAAAASSGGATTSSNRRPRGRPPGSKNKPKPPIIVTRDSPNALRSHVLEVAAGADVMESVLNYARRRGRGVCVLSGGGTVMNVTLRQPAVYLIMHVFPSLLQSAFL* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 474842 476501 - Vvi18g37 Vvi18g37 779740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g37 227 MobiDBLite consensus disorder prediction 91 105 - -
Vvi18g37 227 MobiDBLite consensus disorder prediction 90 160 - -
Vvi18g37 227 CDD DUF296 165 210 IPR005175 -
Vvi18g37 227 Gene3D - 164 218 - -
Vvi18g37 227 ProSiteProfiles PPC domain profile profile. 161 227 IPR005175 -
Vvi18g37 227 MobiDBLite consensus disorder prediction 126 141 - -
Vvi18g37 227 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 205 IPR005175 -
Vvi18g37 227 MobiDBLite consensus disorder prediction 106 120 - -
Vvi18g37 227 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 71 210 - -
Vvi18g37 227 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 210 - -
Vvi18g37 227 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 71 210 IPR014476 GO:0003680
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g37 - - - vvi:100242785 239.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g37 Blo01g01651 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1