Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g374 ATGGGGCATCTTCCAGCAATCCGGCATCTCATCAGTCATCTCCACATGTCTCCAAGGCTCTCCTCATCATCACCAACCACAAGATCCTCTTTACAACCGCTCTTTTCCATCCCTACTTTTCAAAAACTATATTCCTTCTTCCCTCCCTCTCTTAAACCCTACCACACTCACTCCAAAACCCTAGTACCCCATCTCCACCTCACCCCCAATGATACTACGCTGGTTCTGAAGAAAGATGAGCGGTTGGGGTCGCGTTCCGTTAATCAGGAGCATATTGAGGGCACTAGCACGACCACAATTGCAGCCATTGTGACTTCATTGGGGGGTCCTCCTAGTGCCGTGGGAATTGTCCGGTTATCGGGACCAGAAGCAGTGGCCATCGTTGCCCGTGTATTCCGTCCCGCTCGGAGGAACAAAGGCAAGACTTTGGGTTCGGGTTCGGGTTCGTGGCGGCCCACCAGTCATGTGGTGGAGTACGGTGTCGTTTTGGACCACCACGGGAATGTGGTGGACGAGGTTCTAGCCATACCAATGTTGGCCCCAAGATCCTACACTCGTGAAGATGTGGTTGAGCTTCAGTGTCATGGCAGTGAAGTGTGTTTACGCCGTGTGTTGAGAGCTTGCTTGGAATCTGGGGCAAGGCTTGCAGAACCAGGCGAGTTCACCCTTCGTGCTTTTCTTAATGGTCGATTAGATCTCTCCCAAGCTGAAAATGTGGGAAAACTAATTTCAGCCAAGTCCATTGCTGCTGCAGATGCAGCACTTGCAGGAATTCAGGGAGGTTTCTCATCTTTGGTTAGATCACTTAGAATACAGTGCATCGAGTTGCTTACTGAAATTGAAGCTCGATTAGATTTTGATGACGAGATGCCACCATTGGACTTGAATCTCATTATGGATAAAATACATTCCATGTCACAAGATGTGGAGAATGCATTGGAGACTGCCAATTATGACCAGCTACTGCAATCTGGACTACAGATAGCAATTATTGGTCGTCCAAATGTTGGGAAGTCCAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACAGAGATAGCTGGAACCACACGGGATGTGGTGGAAGCCAGTGTTTCCATTCATGGCATCCCTGTCACCCTCCTTGATACAGCAGGTATTAGGGAAACAGATGACATTGTGGAGAAGATTGGTGTAGAGAGATCCGAAGCAGTTGCTATCAGTGCAGATGTCATTATCATGACGATAAGTGCATTAGACGGGTGGACATCACAAGATACCAAACTTTTTAACAGGATTATATCCAATAAGAAATTCGTTGAATCTTCTACTCCAGTGATCCTTGTAGTCAACAAAATAGATTGTGCTCCATCTGCATGCACCGAATTGTTTATGGAGGGAAACTCTTTCAGTAAGCACATTTTCACTTGTGCAGTCACCGGCCAAGGAATATCAGACTTGGAGTCAGCAATAATAGAGATTGTTGGTCTCAACAAGATTCCTGCAGGGGGGCGCAGATGGACTGTAAACCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTCTTGCAAGGTTGATATCCTCTATAGAGGAGGAAATGCCTCTTGACTTCTGGACAATTGATTTGAGGGAAGCCGCATTGGCCCTTGGCCAGATAAGTGGAGAAGATATCTCTGAAGAAGTTTTGACCAACATCTTTGGCAAGTTCTGTATTGGTAAGTAG 1716 46.79 MGHLPAIRHLISHLHMSPRLSSSSPTTRSSLQPLFSIPTFQKLYSFFPPSLKPYHTHSKTLVPHLHLTPNDTTLVLKKDERLGSRSVNQEHIEGTSTTTIAAIVTSLGGPPSAVGIVRLSGPEAVAIVARVFRPARRNKGKTLGSGSGSWRPTSHVVEYGVVLDHHGNVVDEVLAIPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLESGARLAEPGEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHSMSQDVENALETANYDQLLQSGLQIAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVNKIDCAPSACTELFMEGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCEQLVRTKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIGK* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4087209 4096373 + Vvi18g374 Vvi18g374 780077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g374 571 Hamap tRNA modification GTPase MnmE [mnmE]. 98 571 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vvi18g374 571 Pfam GTP-binding protein TrmE N-terminus 99 230 IPR018948 -
Vvi18g374 571 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 325 492 IPR031168 -
Vvi18g374 571 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 112 571 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vvi18g374 571 Gene3D Probable tRNA modification gtpase trme; domain 1 84 230 IPR027266 GO:0005515
Vvi18g374 571 Pfam MnmE helical domain 233 568 IPR025867 -
Vvi18g374 571 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 97 571 - -
Vvi18g374 571 Pfam 50S ribosome-binding GTPase 327 448 IPR006073 GO:0005525
Vvi18g374 571 TIGRFAM small_GTP: small GTP-binding protein domain 326 482 IPR005225 GO:0005525
Vvi18g374 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 489 IPR027417 -
Vvi18g374 571 Coils Coil 510 530 - -
Vvi18g374 571 PANTHER TRNA MODIFICATION GTPASE GTPBP3 97 571 - -
Vvi18g374 571 CDD trmE 323 492 IPR031168 -
Vvi18g374 571 Gene3D - 326 499 IPR027417 -
Vvi18g374 571 Gene3D tRNA modification GTPase MnmE domain 2 231 571 IPR027368 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g374 K03650 mnmE, trmE, MSS1; tRNA modification GTPase [EC:3.6.-.-] - vvi:100242149 1062.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g374 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009928 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31