Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g378 ATGACGGGCACCTCAACAACTAAACTACTGAGCATTCTATGCGCAGCCTTTTCTTGTATACTGTCTCTTTCTTATGGGAGAGTAAATCCCAATTTTCAAGTTAAAGCGGTAAATCTTGGAGGTTGGCTGGTTACAGAAGGTTGGATTAAGCCATCTCTCTTTGATGACATTCCCAACAAAGATTTCCTGGATGGAACTGAACTCCAGTTCAAGTCAGTAACAATTGGGAAGTATCTCTGCGCAGAGACGGGAGGTGGAACAATCATAGTTGTGAATCGAACAGCGGCCTCGGGCTGGGAAACATTTAGATTGTGGAGGATCAATGAAACCGCTTTCCATTTTAGAGTCTTCAACAAACAGTTCATGGGACTAGACACTGCCGGCAATGGGATCGATATAGTAGCAGTTTCAAACACCCCTGGTGGATCCGAAACATTCCAGATCGTGAAGAACCCAAATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAGGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGGGGTGATGATGATCCCACGGTGTTTGTGATGACCGTCAATGTAGCCTTGGAAGGCGAGTTTCAAGTCACTAACGGCTATGGCCCAGACAAAGCTCCTCAAGTCATGAAGGAGCACTGGAGCACATTCATTGTGGAAGATGACTTCAAGTTCATATCAGAAAATGGATTGAATGCAGTGAGGATTCCTGTTGGATGGTGGATAGCATGTGATCCAACACCTCCATCTCCTTTTGTTGGAGGGTCTTTGTACGCCCTTGACAATGCCTTCACTTGGGCTCGGAAATATAAGGTGAATGTTATAATTGATCTACATGCAGCACCGGGTTCTCAGAACGGTTGGGAACATAGTGCTTCCAGAGACGGGTCTCAGGAATGGGGGAAGACTGACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTAACTGCCAGGTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCTATCACCGGGAGCAACTCTAGAAATGGTTACCAAGTACTACAGGGCCGGTTATGAAGCTGTGCGGAAGCATTCTTTGACAGCTTATGTGGTCATGTCAAACCGATTAGGACCAGCTGATTCGAGGGAGCTCTTTCCTCTCACCAGTGGCTTAAGTAGAGCAGTCATTGACGTCCATTACTACAACCTCTTCGAAGATATGTTTGACCACATGACTGTCCAACAGAATATTGATTTCGTCAACACCAACAGATCAGCACAATTGGGGCGTGTAACCACTTCCAATGGGCCTCTCACTTTTGTTGGGGAATGGGTGGTAGAATGGAAAGTTGAGGGAGCTACAAAGAAGGACTACCAGAGATTCGCAAAGGCTCAATTGAAGGTGTTTGGGCGGGCAACTTTTGGGTGGGCTTACTGGACTCTGAAGAACGTGAAGAACCATTGGAGCCTAGAGTGGATGATCAACAATGGTTACATCAAGCTTTAG 1527 46.5 MTGTSTTKLLSILCAAFSCILSLSYGRVNPNFQVKAVNLGGWLVTEGWIKPSLFDDIPNKDFLDGTELQFKSVTIGKYLCAETGGGTIIVVNRTAASGWETFRLWRINETAFHFRVFNKQFMGLDTAGNGIDIVAVSNTPGGSETFQIVKNPNDSKRVRIKAPNGFFLQAKTEELVTADYAGDGGWGDDDPTVFVMTVNVALEGEFQVTNGYGPDKAPQVMKEHWSTFIVEDDFKFISENGLNAVRIPVGWWIACDPTPPSPFVGGSLYALDNAFTWARKYKVNVIIDLHAAPGSQNGWEHSASRDGSQEWGKTDQNIQKTVAVIEFLTARYANNPSLYAVELINEPLSPGATLEMVTKYYRAGYEAVRKHSLTAYVVMSNRLGPADSRELFPLTSGLSRAVIDVHYYNLFEDMFDHMTVQQNIDFVNTNRSAQLGRVTTSNGPLTFVGEWVVEWKVEGATKKDYQRFAKAQLKVFGRATFGWAYWTLKNVKNHWSLEWMINNGYIKL* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4130709 4134329 - Vvi18g378 Vvi18g378 780081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g378 508 Pfam Cellulase (glycosyl hydrolase family 5) 221 490 IPR001547 GO:0004553|GO:0071704
Vvi18g378 508 PANTHER CELLULASE CONTAINING PROTEIN, EXPRESSED 11 508 - -
Vvi18g378 508 SUPERFAMILY Actin-crosslinking proteins 69 185 IPR008999 -
Vvi18g378 508 Gene3D - 43 186 - -
Vvi18g378 508 SUPERFAMILY (Trans)glycosidases 33 506 IPR017853 -
Vvi18g378 508 Gene3D Glycosidases 191 508 - -
Vvi18g378 508 PANTHER FASCIN 11 508 IPR010431 GO:0007015|GO:0051015
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g378 - - - vvi:100257534 1034.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g900 Vvi18g378 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g378 . . . . Bpe02g00094 . . Bma01g02623 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1235 Cone20ag0489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015720 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 7