Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g381 ATGAGTACTGGTCTAAAGAAATCTCCTTCAAATGGCTATGAGAAACCTTCAACATCTAAAGAACAGCAGGAGAAGATTAATGAGGTGAGAAGATTGATAGGGCCATTGCCAGATAGGTTGTCTATTTACTGTTCTGATGCATCAATAGCCAGATACTTAACGGCACGAAACTGGAATGTCAAGAAGGCAACTAAAATGCTGAAAGAAACTTTGAAATGGAGATCAGAATACAAACCAGAAGAGATTCGCTGGGAAGACATTGCTCAAGAAGCAGAGACTGGAAAAATATACAGGGCAAATTATATTGACAAACATGGGAGAACAGTTCTTGTCATGAAACCAAGCTGCCAGAACTCGAAGTCAACAAAAGGGCAAATTAAATATTTGGTGTATTGCATGGAGAATGCCATTTTAAATCTGCCACCCAACCAAGAGCAGATGGTATGGATGATTGACTTTCAGGGTTTCAATTTGTCAAATATTTCAGTGAAGTTGACTCGGGAAACAGCCCATGTTCTACAAGACCGTTACCCAGAACGGTTGGGTCTAGCAATACTATACAACCCACCCAAGTTCTTTGAACCATTCTGGACGGTGGTAAAACCGTTTCTGGAGCCGAAGACTTGTAAAAAAGTAAAGTTTGTGTACTCTGATGATCTCAATGCCAAGAAGATAATGGAGGACCTATTTGATATGGACAAGCTTGAGTCTGCATTTGGTGGGAATGATACCGTGGGTTTTAATATTAATAAATATTCTGAAAGCATGAGAGAAGACGATAAGAAGATGCCATCTTTTTGGACAAAAGATAGTCATCCTTCAGGAGCCGCCCTGCAACCAGCCCTGGCAAATGACCCCACTTTGACTCCTATCAACCTACAGTCAGATTCTGATGCTTCAGACAAAGAGAGAGCTGAGAATCCCCCCTCTTTGACTCATATTAACTTACAGTCAGATTCTGATGCTTCAGACAAAGAGAGAGCAGAGAATTCCCCCTCTCATGGTGTAAATTCAGGAGAAGGTCCTCTAGACAACAATGTGCTGGTGAGTGATGAAAGCAGAAATGGAGCGGTAGGTATACATTAA 1086 41.25 MSTGLKKSPSNGYEKPSTSKEQQEKINEVRRLIGPLPDRLSIYCSDASIARYLTARNWNVKKATKMLKETLKWRSEYKPEEIRWEDIAQEAETGKIYRANYIDKHGRTVLVMKPSCQNSKSTKGQIKYLVYCMENAILNLPPNQEQMVWMIDFQGFNLSNISVKLTRETAHVLQDRYPERLGLAILYNPPKFFEPFWTVVKPFLEPKTCKKVKFVYSDDLNAKKIMEDLFDMDKLESAFGGNDTVGFNINKYSESMREDDKKMPSFWTKDSHPSGAALQPALANDPTLTPINLQSDSDASDKERAENPPSLTHINLQSDSDASDKERAENSPSHGVNSGEGPLDNNVLVSDESRNGAVGIH* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4148990 4155240 - Vvi18g381 Vvi18g381 780084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g381 361 MobiDBLite consensus disorder prediction 332 352 - -
Vvi18g381 361 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Vvi18g381 361 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 304 - -
Vvi18g381 361 CDD SEC14 92 242 IPR001251 -
Vvi18g381 361 SUPERFAMILY CRAL/TRIO N-terminal domain 16 86 IPR036273 -
Vvi18g381 361 MobiDBLite consensus disorder prediction 1 24 - -
Vvi18g381 361 SUPERFAMILY CRAL/TRIO domain 84 270 IPR036865 -
Vvi18g381 361 Pfam CRAL/TRIO, N-terminal domain 45 69 IPR011074 -
Vvi18g381 361 MobiDBLite consensus disorder prediction 262 361 - -
Vvi18g381 361 PANTHER GH16843P 1 304 - -
Vvi18g381 361 SMART sec14_4 90 244 IPR001251 -
Vvi18g381 361 Gene3D - 3 276 IPR036865 -
Vvi18g381 361 MobiDBLite consensus disorder prediction 1 17 - -
Vvi18g381 361 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Vvi18g381 361 Pfam CRAL/TRIO domain 93 241 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g381 - - - vvi:100250501 738.028
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g381 . . . Bda03g00501 Bpe02g00096 Bpe04g00456 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1579 . . . Csa04g01845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011765 1 3 0 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 3 1 29