Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g383 ATGGGTTCTCGAGGAAGACCACTATTTGATCTTAATGAACCCCCTGCAGAAGATGAAGAAGAGAATGATGGTGTCTTTAGCTTCCAGCCTCAGAAGGCACTTCCTTCCTTAAATTCCCATACTCCTGACTTGTTTTCTACATCATCAGGGCTGGGAATCAGAATTCAAACTGTTGAAAGAGAAGAAGGGGAATGGTCTGATGATGAAAGCTCAGCTAATGTATATGGAAGCAGTATTTTTGAAAGTACCAAGGAGGAAAATAATAGTCATGCCTCTGTAACGTTGGATCCAGACACACATGATCAGAGAAGTAACAGTAGCAGAAATTCAGAAGGCAATGGTAAAGGTGATGTGGGTCCCATGGATGGTCAGGAAGAACCTGGTTTAGTACCAAAACTGAAAGAAGTTAAGGGAGTTGAAGCAAGCTTTGCTGTGAAATGTGCAAATAATCCTGGAAAAAAGCATAAGCTTGACCAACACAAAGAAGCGATGCTTGGGAAAAAAAGAACCAGGCAGACTGTGTTTCTTAATTTGGAAGATGTCAAGCAAGCTGGCCCTATGAAAACTTCCACTCCAAGAAGACAAAACTTTCCAGCACCTATTACAACACGAATTGTTAAAGAAATTCGTTCTGTTCCTCCACCTGCTGAACGCATTGGAGAAAAGCAGAATCATTCCATGATTAAAGATCAGAAACAAGTGGATTTATCATCTAATGAAGGAGGAGGAGGAAATCTTGTAGAATCTAATGAACCTAAATCTGAAAGTAACAATGATATGAATTCTGGACTTCTAGGTAGACCTAGGAGGCTAAATAGTGCTAATGATATTTCTGCAGAGGTGCACCCACCAACAATTCCAAGACAGAGTTCATGGAAGCCCACAGATTCAAGGCAATTTAAGAATTCACAGTTTTCTGGCAGGAAGCCATCTATGATCAATCAAAGTGAATCAAAATTGGTAAACAAAAAACATCCTCCTGCCAAAATGCAAACTACAGTGAGCTCACAATATCAAGATACTTCAGTGGAACGCCTTATACGGGAGGTGACAAATGAAAAGTTTTGGCATCACCCAGAGGAGACTGAGCTCCAATGTGTTCCTGGTCGGTTTGAATCTGTAGAAGAATATATTAGAGTGTTTGAGCCTTTGCTTTTTGAGGAATGCCGAGCACAACTCTATAGCACCTGGGAGGAGTTAACTGAAACAGTTTCAAGAGATCTACATGCAATGGTCCGGATAAAAAGCATTGAAAGGCGAGAAAGAGGATGGTATGATGTGATAGTCCTTCCAGCAAATGAATGCAAGTGGACATTTAAAGAGGGTGATGTTGCAATTCTTTCGGCTCCCAGGCCTGGATCAGTTAGATCCAAGAGGAATAACACATCTTCAATTGAAGATGATGAAGAGGCGGAGATCAGTGGACGTGTGGCTGGTACTGTCAGACGACACAATCCAATTGACACTCGTGATCCTGTGGGTGCAATCCTCCATTTTTATGTTGGGGATTCATATGATCCTAACAGCAAGGTTGATGATCATATTCTAAGGAAACTTCATCCCAAGGGTATCTGGTATTTAACAGTGCTTGGTTCTCTTGCAACCACCCAGCGGGAGTACATTGCTCTTCATGCATTTCGTCGTCTCAATTTACAGATGCAAACTGCTATCCTTCATCCAAGTCCAGAACACTTCCCAAAATATGAAGAGCAGCCCCCTGCCATGCCTGAATGCTTCACACCGAACTTTGTTGAATATTTACACAAAACCTTCAATGGTCCCCAGCTAGCAGCAATTCAATGGGCTGCCATGCATACGGCTGCTGGCACAAGTAGTGGGGTGACAAAGAGGCAAGACCCATGGCCATTTACTCTAGTTCAAGGGCCTCCAGGGACAGGCAAGACACACACAGTCTGGGGAATGCTAAATAGCACTTCTGACAATGTCTCTATGGGATCCATTGATGAAGTTCTCCAGAGCATGGATCAAAACCTCTTCCGCACTCTTCCAAAACTTTGCCCAAAACCTAGAATGCTTGTTTGTGCTCCCTCTAATGCTGCAACTGATGAGCTGCTGGCACGTGTTCTTGATCGTGGATTTATTGATGGTGAGATGAAAGTTTATCGTCCTGATGTGGCCCGAGTTGGAATTCTGGTTGAAATGAACCGCCTGGTCATTTTAGAAAGCAGGTTCCGTTCTGGAAGCAATTTCAATTTGGAAGAAGCCCGTGCAAATCTTGAAGCAAGTTTTGCCAATGAGGCTGAGATTGTTTTCACTACTGTCTCAAGTAGCGGCCGTAAATTGTTTTCTAGGCTTACTCATGGCTTTGATATGGTTGTTATTGATGAGGCCGCCCAAGCCAGTGAAGTAGCAGTTCTACCTCCCCTTTCTCTTGGTGCAGCACGTTGTGTTCTTGTTGGGGATCCTCAGCAGCTGCCTGCAACAGTAATCAGCAAAGCCGCTGGAACATTGTTATACAGTAGAAGCCTCTTTGAAAGGTTCCAGCAAGCAGGCTGCCCGACAATGTTGTTATCTGTGCAGTACAGGATGCACCCTCATATTCGGGATTTCCCATCAAGGTACTTTTACCAAGGACGTCTTACTGACAGTGAAAGTGTTACTAATTTACCTGATGAGGCATACTACAAGGATCCTTTACTTAGACCTTATGTGTTCTATGATATTACACATGGACGGGAGTCACACAGAGGTGGATCTGTCTCCTATCAGAACATACATGAAGCACAAATATGTCTCCGTTTGTATGAGCATCTCCAGAAAACTTTGAAGTCTTTGGGTATGGGAAAAATTTCTGTTGGCATAATCACACCATACAAGCTGCAGCTGAAATGCCTACAACGGGAATTTGATGATGTTTTAAGTTCTGAAGAAGGGAAGGATTTGTATATCAATACTGTTGATGCTTTCCAAGGGCAGGAACGTGATGTCATTATTATGTCCTGTGTCCGTGCCTCTAGTCACGGGGTGGGCTTTGTAGCTGATATACGCCGAATGAATGTTGCTCTCACTCGTGCAAGAAGGGCACTATGGGTTATGGGGAATGCTAATGCGCTGATGCAGTCTGATGACTGGGCAGCATTGATTTCTGATGCCAGAGCCAGGAGTTGCTATTTGGATATGGACTCTCTTCCCAAGGAGTTTCTTGTACCAAAGGGACCTACTTATGGCCCATTATCAGTCAGGAACTCCGTCAGAAGATGA 3222 43.54 MGSRGRPLFDLNEPPAEDEEENDGVFSFQPQKALPSLNSHTPDLFSTSSGLGIRIQTVEREEGEWSDDESSANVYGSSIFESTKEENNSHASVTLDPDTHDQRSNSSRNSEGNGKGDVGPMDGQEEPGLVPKLKEVKGVEASFAVKCANNPGKKHKLDQHKEAMLGKKRTRQTVFLNLEDVKQAGPMKTSTPRRQNFPAPITTRIVKEIRSVPPPAERIGEKQNHSMIKDQKQVDLSSNEGGGGNLVESNEPKSESNNDMNSGLLGRPRRLNSANDISAEVHPPTIPRQSSWKPTDSRQFKNSQFSGRKPSMINQSESKLVNKKHPPAKMQTTVSSQYQDTSVERLIREVTNEKFWHHPEETELQCVPGRFESVEEYIRVFEPLLFEECRAQLYSTWEELTETVSRDLHAMVRIKSIERRERGWYDVIVLPANECKWTFKEGDVAILSAPRPGSVRSKRNNTSSIEDDEEAEISGRVAGTVRRHNPIDTRDPVGAILHFYVGDSYDPNSKVDDHILRKLHPKGIWYLTVLGSLATTQREYIALHAFRRLNLQMQTAILHPSPEHFPKYEEQPPAMPECFTPNFVEYLHKTFNGPQLAAIQWAAMHTAAGTSSGVTKRQDPWPFTLVQGPPGTGKTHTVWGMLNSTSDNVSMGSIDEVLQSMDQNLFRTLPKLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGILVEMNRLVILESRFRSGSNFNLEEARANLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPHIRDFPSRYFYQGRLTDSESVTNLPDEAYYKDPLLRPYVFYDITHGRESHRGGSVSYQNIHEAQICLRLYEHLQKTLKSLGMGKISVGIITPYKLQLKCLQREFDDVLSSEEGKDLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWAALISDARARSCYLDMDSLPKEFLVPKGPTYGPLSVRNSVRR* 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4159691 4169330 - Vvi18g383 Vvi18g383 780086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g383 1073 MobiDBLite consensus disorder prediction 210 337 - -
Vvi18g383 1073 MobiDBLite consensus disorder prediction 1 134 - -
Vvi18g383 1073 Gene3D - 848 1053 IPR027417 -
Vvi18g383 1073 CDD SF1_C_Upf1 850 1039 IPR041679 -
Vvi18g383 1073 MobiDBLite consensus disorder prediction 230 263 - -
Vvi18g383 1073 MobiDBLite consensus disorder prediction 451 473 - -
Vvi18g383 1073 MobiDBLite consensus disorder prediction 284 321 - -
Vvi18g383 1073 Pfam AAA domain 826 1022 IPR041679 -
Vvi18g383 1073 PANTHER DNA2/NAM7 HELICASE FAMILY 662 717 IPR045055 -
Vvi18g383 1073 PANTHER DNA2/NAM7 HELICASE FAMILY 1 49 IPR045055 -
Vvi18g383 1073 PANTHER DNA2/NAM7 HELICASE FAMILY 165 643 IPR045055 -
Vvi18g383 1073 PANTHER DNA2/NAM7 HELICASE FAMILY 717 1070 IPR045055 -
Vvi18g383 1073 CDD DEXXQc_SETX 591 849 - -
Vvi18g383 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 1049 IPR027417 -
Vvi18g383 1073 Gene3D - 529 847 IPR027417 -
Vvi18g383 1073 MobiDBLite consensus disorder prediction 29 54 - -
Vvi18g383 1073 MobiDBLite consensus disorder prediction 70 113 - -
Vvi18g383 1073 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 49 - -
Vvi18g383 1073 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 165 643 - -
Vvi18g383 1073 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 662 717 - -
Vvi18g383 1073 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 717 1070 - -
Vvi18g383 1073 Pfam AAA domain 729 819 IPR041677 GO:0004386
Vvi18g383 1073 Pfam AAA domain 596 717 IPR041677 GO:0004386
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g383 - - K10706 vvi:100255680 1299.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37