Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g386 ATGGCAGAGTTTCAGAACCCTGATTTGGAATACGTTGTTGATGACTACTACGACATGACCGATTTTGAAGAAGACTCTTTTTCTGAGACCGATCCACAGAGGAACAGTCCCTTTGAGGCTTTCGACTCGGACGTTGAAGACAACTTTGAAATGAACAAGCCAAAGACTGATACCTCTGCTCTGGAAGCTAGAAATGGGAAAGATATACAGGGAATTCCCTGGGAGAGGCTTAATTTTACTAGAGATAAGTATCGGGAGACAAGATTGGAACAATACAAGAATTATGAGAACCTATCGCGCCCTCGGGAAGAGCTTGAAAAGGACTGCAAGAAAATAGAGAAGGGAAGCACCTTCTATGATTTTCAGTTCAACACAAGGCTTGTCAAGTCAACCATTGTGCATTTCCAGTTTTGCAGGTTTTGTAAATATGTTATTATCCTATCCTTTATGGACATCTTTATTAAGATAGTAGCTCTTTTGAGAAGTGTTCCAGCTAAAATTCTGCTGCAAAATGTTGCAATTGGTGCCTTAAAAGCAGGATGGAAGTTATATCTGAGCAGCTGGCGCAATAAGGATACATTGTTCATATGGCGTGTAAAATTTTCTGTTTCCATGGCACAAATGTGTGTACAAGTCAGCAAAATAAGCATATTATATAATCTATTGTGCACAACTGGGACCATAATTTGTACCAGTTCCATCTTGCATTCAGTGGCATGTTTTTATGCAAGGATTTTGATATTTAGGGTTGAGTTGGCTTTTAGGTATCACTGCTGTGAATGGCCTTTCATTTACAATGGTATGGCAGGGATAATATTTTCACTTGACATTCTGAGGAATTTGTTATGGGCAACATCGAAGCATGATGTATACCTTATGCAGAACTACTCAGTAATGCACTGGTCCTCATTGCTGAGGAGGGGTAAAGAAGTACTAAACGTGGCTAAACCAATTGTTTCCACACTGAAGTGCCCAGGATCTTTGGGGCAGTCACTCTCAAGAGTGCAGATAAGCACTATGACCGTTAAAGAGAACTTAATGGTGGCAGGTGGTTTTCAGGGAGAGCTTATTTGCAAGAATTTGAGTCAGCCTGGGGTTGCATTTTGTGCAAAATTAACCACAGATGATAATGCCATCACCAATGCGGTTGATGTATACCATAACCCCAATGGCTCGTTGAGGGTCATGGCTGCAAACAACGACGCTGAAGTTAGGATCTTTGATGCTGAGAACTTCGCTTGCCTTAATCGGTTCACCTACCCTTGGTCTGTAAATAACACCTCTGTTAGCCCAGATGGAAAGCTGCTAGCTGTCCTTGGTGATAGTGCAGAGTGCTTGCTAGCTGATGCTCAGACAGGGAAAGTTGTTGCAACCCTTAAGGGGCACTTGGACTATTCGTTTGCTTCAGCTTGGCACCCAGATGGACGAACATTGGCGACTGGAAACCAGGACACAACATGTAGACTCTGGGACATACGGAACCTTTCCGAGTCTCAGGCGGTACTTAAGGGAAGGATGGGAGCAATACGAGCTGTGAGGTTCTCTTCAGATGGTCGATTTATGGCTATGGCTGAGCCTGCAGACTTTGTCCATGTCTTTGACACGGAGTCAGGTTATGTGAAGGGGCAGGAGATTGATCTTTTTGGCGAGATTGCTGGAATATCCTTCAGTCCTGACACAGAAGCTCTTTTTGTTGGGATTGCGGATCGCACCTACGGTAGCTTATTAGAATTCAACAGGAGGAGGTGTAATCAGTATTTGGATTCCATTATATAG 1776 43.13 MAEFQNPDLEYVVDDYYDMTDFEEDSFSETDPQRNSPFEAFDSDVEDNFEMNKPKTDTSALEARNGKDIQGIPWERLNFTRDKYRETRLEQYKNYENLSRPREELEKDCKKIEKGSTFYDFQFNTRLVKSTIVHFQFCRFCKYVIILSFMDIFIKIVALLRSVPAKILLQNVAIGALKAGWKLYLSSWRNKDTLFIWRVKFSVSMAQMCVQVSKISILYNLLCTTGTIICTSSILHSVACFYARILIFRVELAFRYHCCEWPFIYNGMAGIIFSLDILRNLLWATSKHDVYLMQNYSVMHWSSLLRRGKEVLNVAKPIVSTLKCPGSLGQSLSRVQISTMTVKENLMVAGGFQGELICKNLSQPGVAFCAKLTTDDNAITNAVDVYHNPNGSLRVMAANNDAEVRIFDAENFACLNRFTYPWSVNNTSVSPDGKLLAVLGDSAECLLADAQTGKVVATLKGHLDYSFASAWHPDGRTLATGNQDTTCRLWDIRNLSESQAVLKGRMGAIRAVRFSSDGRFMAMAEPADFVHVFDTESGYVKGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRRRCNQYLDSII* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4204992 4213214 + Vvi18g386 Vvi18g386 780089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g386 591 SMART WD40_4 411 449 IPR001680 GO:0005515
Vvi18g386 591 SMART WD40_4 495 534 IPR001680 GO:0005515
Vvi18g386 591 SMART WD40_4 452 491 IPR001680 GO:0005515
Vvi18g386 591 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 500 IPR001680 GO:0005515
Vvi18g386 591 Pfam WD domain, G-beta repeat 454 491 IPR001680 GO:0005515
Vvi18g386 591 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 205 590 - -
Vvi18g386 591 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 137 - -
Vvi18g386 591 MobiDBLite consensus disorder prediction 23 42 - -
Vvi18g386 591 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 459 494 - -
Vvi18g386 591 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Vvi18g386 591 Gene3D - 325 584 IPR015943 GO:0005515
Vvi18g386 591 SUPERFAMILY WD40 repeat-like 334 571 IPR036322 GO:0005515
Vvi18g386 591 PANTHER OS03G0386000 PROTEIN 1 137 - -
Vvi18g386 591 PANTHER OS03G0386000 PROTEIN 205 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g386 - - - vvi:100267825 633.254
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74