Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g387 ATGAAAAATGCTTCTTCTACTTCCCCTTCTTCAACCCTATCTCCTTCGTCTTCACCTTCTACCTCTTCTTTCTATCCTTCATCCGATTTCTACTCTCCTATCTCAACCCAGTATCCAGATGGATGCTCGACCTCGACCACCCATGTAATTTCCCAAGGGTTCTCGAGTCATGACCTACAGGGTTTCGAGCATTCGGGTCCAATTGGGCTCAATCACCTAACACCCTCTCAGATTCACCAGATCCAAGCCCAGATCCAGCTTCAGCAACACCACAACCACATGCCTGCCCCCATCCCCATGAAGCAAGTGGGCGTACCTCCAAAACCCACAAAGCTCTATAGAGGGGTGAGACAACGGCATTGGGGAAAATGGGTCGCCGAGATCCGACTTCCCAAGAACCGAACCAGGCTCTGGCTTGGCACCTTCGACACCGCCGAAGAAGCCGCCTTGGCTTACGACAAGGCCGCGTACAAACTTAGAGGTGACTTCGCGAGGCTTAATTTCCCAAATCTCCGCCACCAAGGATCCCATATCGGAGGCGAATTTGGGGACTACAAGCCTCTCCATTCCTCAGTTGACGCAAAGCTTCAAGCCATTTGCCAGAGCTTGGCTGAAACCCAGAAACAGGGGAAGCCTACCCAGGGCAAGAAATCCAGGTCGCGGGCGGTGGCGCCCTCTGCGTCACAGCCGAGTGATGGGTCCGGAGGATCCTCGCCCCTCTCGGATCTTACTTTCCCAGATGATTGCGAAGAAGCACCGTTCTACGGTGCTTGGGAGAATTTCAATTTGCAGAAATATCCCTCTAACGAGATCGATTGGGCAGCTATTTCATCCCAATGGCCATGA 846 52.72 MKNASSTSPSSTLSPSSSPSTSSFYPSSDFYSPISTQYPDGCSTSTTHVISQGFSSHDLQGFEHSGPIGLNHLTPSQIHQIQAQIQLQQHHNHMPAPIPMKQVGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSHIGGEFGDYKPLHSSVDAKLQAICQSLAETQKQGKPTQGKKSRSRAVAPSASQPSDGSGGSSPLSDLTFPDDCEEAPFYGAWENFNLQKYPSNEIDWAAISSQWP* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4220982 4221999 + Vvi18g387 Vvi18g387 780090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g387 281 MobiDBLite consensus disorder prediction 205 247 - -
Vvi18g387 281 Pfam AP2 domain 113 161 IPR001471 GO:0003700|GO:0006355
Vvi18g387 281 Gene3D AP2/ERF domain 112 170 IPR036955 GO:0003700|GO:0006355
Vvi18g387 281 MobiDBLite consensus disorder prediction 1 25 - -
Vvi18g387 281 MobiDBLite consensus disorder prediction 219 241 - -
Vvi18g387 281 CDD AP2 111 171 IPR001471 GO:0003700|GO:0006355
Vvi18g387 281 SUPERFAMILY DNA-binding domain 112 170 IPR016177 GO:0003677
Vvi18g387 281 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Vvi18g387 281 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Vvi18g387 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 12 276 - -
Vvi18g387 281 PANTHER DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 3 12 276 - -
Vvi18g387 281 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Vvi18g387 281 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14324 PF00847 AP2 5.70E-15 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g387 K09286 - vvi:100245515 468.388