Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g389 ATGACCAACCAGAATGTGGCGGTTTCTGATCCAAAATCAGCTATTGGTATGGCGATTGACGTTATTGTGTCGAACTCTTCTTTTTTCTCACCGGCGGTGCGTAAGCCGCCGACTGTACCGGGTGGGTACATCACCATTTCTCTTAAGAAACTCGAAACTGGAGGAGCCGGAGGAGCCGGTAGAGTCGGTGCCTGGGTGGATTCAATGAGAGCTTCGTCTCCTACCCATATCAAATCCACTCCTCTTTCTGATAGTGAAGCCCTGAGTTCCTGGATGCTTCATCATCCGTCAGCTTTGCGCACGTTCGAGCAGATAACGAATGCTTCGGAAGGGAAGCAGATTGTGATGTTTCTCGATTATGATGGTACCCTCTCGCCGATTGTGGAAGACCCAGATCAAGCTTTCATGTCTAAAGAGATGCGAGCCGCCGTAAAGGATGTCGCCAGATATTTCCCCACTGCCATAGTGAGCGGGAGGTGCAGAGATAAGGTCTATAGATTTGTTAAATTATCAGAGCTCTATTATGCAGGCAGCCATGGCATGGACATCAAAGGACCAGCCAAAGGCCGCAAATACAAGAAAGGTGATCAATCCCTTCTCTGCCAACCCGCCAGCGAATTTTTACCCATGATCGATGAGGTGTACAAGGCCCTGCTAGAGAAAACCAAATCCACCCCAGGAGCAAAGGTGGAAAACAACAAGTTCTGCTTATCAGTACACTTTCGCTGTGTTGACGAGCAGAGATGGACAGCATTGGCCGAGCAGGTTAGATTAGTCCTTAACCAATACCCAAAGCTCAGATTGACTCAAGGCAGGAAGGTATTAGAGATTCGTCCTACCATCAAATGGGACAAGGGAAACGCCCTCGAATTCTTGTTGGAGTCACTAGGATATGCCAATTCTAATGATGTCTTTCCAATCTACATTGGAGATGATCGAACAGATGAAGATGCATTCAAGGTTTTGCGCAATCGAGGACAAGGGTTTGGGATTCTTGTGTCCAAGTTCCCCAAGGAAACAAGTGCCTCTTATTCTTTGCAAGAACCAACTGAGGTTATGAACTTTTTGCAACTTTTGGTGGAGTGGAAAAGAAGGTCCTTGCAAGACGATATATTGAGTAGAGACTGA 1128 46.99 MTNQNVAVSDPKSAIGMAIDVIVSNSSFFSPAVRKPPTVPGGYITISLKKLETGGAGGAGRVGAWVDSMRASSPTHIKSTPLSDSEALSSWMLHHPSALRTFEQITNASEGKQIVMFLDYDGTLSPIVEDPDQAFMSKEMRAAVKDVARYFPTAIVSGRCRDKVYRFVKLSELYYAGSHGMDIKGPAKGRKYKKGDQSLLCQPASEFLPMIDEVYKALLEKTKSTPGAKVENNKFCLSVHFRCVDEQRWTALAEQVRLVLNQYPKLRLTQGRKVLEIRPTIKWDKGNALEFLLESLGYANSNDVFPIYIGDDRTDEDAFKVLRNRGQGFGILVSKFPKETSASYSLQEPTEVMNFLQLLVEWKRRSLQDDILSRD* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4254677 4257404 + Vvi18g389 Vvi18g389 780092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g389 375 Gene3D - 114 196 IPR023214 -
Vvi18g389 375 Gene3D - 209 372 IPR023214 -
Vvi18g389 375 TIGRFAM T6PP: trehalose-phosphatase 112 360 IPR003337 GO:0003824|GO:0005992
Vvi18g389 375 Pfam Trehalose-phosphatase 117 349 IPR003337 GO:0003824|GO:0005992
Vvi18g389 375 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 42 369 IPR044651 GO:0004805|GO:0005992
Vvi18g389 375 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 116 324 IPR006379 -
Vvi18g389 375 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 42 369 - -
Vvi18g389 375 SUPERFAMILY HAD-like 115 363 IPR036412 -
Vvi18g389 375 CDD HAD_TPP 115 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g389 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - vvi:100243648 736.487
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117