Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g393 ATGACCAAGTGCTCTGTAGATAGTGAACTGGGCTGTAGTTTGATGGAAGGGATTTTCCAGCGCCGGAGCTTTTGGCCAAAGAAAACATCTGTTCGTCCACTACCCACAAACAGCAACAGCACATTGAAGGTAACAAGCCCCAGTGATTCCAAGGGGCGACATGGTGGTTCCCGTGAAACTGCCTCGCTCAACTCCATTTCACCTAAACCTCCGCCAAAACTAGATGAGAAGCTAGTCACAACTCCCAACTTAGTACGCTCCAGGCCTTCAACTTCCAGTCATAAAAGTCAAGGTGCTAGGCCCTCAGATGCTGCAAGGAACTCATCGCTAAGGAGGGAGCCCAATGGCCTCTACACTGAGCCAAATAGGGCGAGTACTGATCACCACCAATCCTATGAAAGCAAAGCTCTCGTCCCCACTTCTTCAGGCAATGTAATGCCTTTAGGCCACTTGGGTAATTTGAAGCCACTGAGAACTGGGAATTCAATGATCACAGACCTACCGGACTCCACCAATAAAACTCGGTATTACCACCAGAGGAAGCTCAGCGATAGCAGAATTGGAAGTAACGGTGTTATGGGCAACATTACACGGAAGCCCAGCAATGAGAATCCAAAGTCGGGAGGCCGATTTCTAGGTCTGTTGAATAAGTTAGATCCAGAGGCATTGAAGTCAATGGGAAATGAGGAGTACAAGCAGGGCAGATTCAAGGAGGCCTTGGCACTATATAACCAAGCAATTGCCCTCAATGCAAATAAGGCATCGTACCATAGCAATAAGAGCGCGGCTTTAATAGGTTTAGGCCATCTTATGGAAGCAGTAATTGAGTGCAGAGAAGCCATTCAAATTGAGCCTTCTTATCACAGAGCTCATCACCGTCTGGCGACACTATATCTAAGACTGGGAGAAGCCGAGAAAGCATTGAATCACTACAAATACTCAAGCCCCACAGACTCTGAATACATCGCCAAAGCTCAAGCTCTGCAAACACACCTCAGTAGGTGCATAGAAGCCCGAAATTTGAGAGACTGGAACACTTTACTTAAGGAGGCAAGGTGTGCAATATCTTCCGGAGCCGATTCAGCTCCCCAGATCTATGCTTTCCAAGCTGAGGCCTTATTGAAGCTCCATAGGCACCAAGAGGCCTATGCTACCTTCCGGAAGGGACCCAAGTTCCAGATTGATTCATGTACTCAGTTCTTTGGACCGGCTGCTAGTGCATATATGTTAATAATTCAGGCACAGCTTTACATGACCATGGGCAGGTTAGAGGATGCCGTGGCCTTGGCTCAGAAAGCAGCTCGACTTGATTCAAGTAACCATGAGGTGACCACAGTGTTGAGAAGAGTTCTAGCTGTGGAATCGGCCCGATTGAGGGGCAATCAGCTCTTCAATGCATCAAAATTTTTGGAGGCTTGCGTTACGTACAATGAAGGATTAGACCATGACCCCTACAACACCATTTTGTTATGCAACCGAGCAGCTTGTCGATCTAAACTTGGCCAGTTTGAGAAAGCGGTTGAAGACTGCACCATGGCACTCATCGTGCAGCCTTCTTACAGCAAGGCAAGGTTGCGTAGGGCCAATTGCAATGCCAAGTTGGAAAGATGGGAGGCCTCTATTCAAGATTATGAGATGTTGATAAGAGAAACTCCGGGTGACGAGGAGGTGGGCCGGGCATTGTTTGAGGCCAAGATCCAGCTCAAAAAGCAACGTGGTGAGGACATTAAGGACATGAAGTTTGGTTCGAACCTGGTCTTCATCTCCAACAATGAGCGTTTCAGACATTTTGTAACCTCCCCAGGGATGTCGGTGGTCCTCTTCTGCAACAAAACTAGTCACAAGCAAGTATTGCAGCTCCTTGAGCAAGTCTGCAAGAGATACCCATCCGTCTACTTCCTCAAGGTGGAGGTTGAAGACCACCCTTACTTGGCAAAGTCAGAGAGTGTGAGCTCCGTTCCGGCTTTTAAGATATACAAGAATGGATCAAGGGTCAAAGAAATTCCAGGCAACAATCGTGAATTATTAGAAAGCTCGGTCAAATTGTACAGCAGTTGA 2058 47.47 MTKCSVDSELGCSLMEGIFQRRSFWPKKTSVRPLPTNSNSTLKVTSPSDSKGRHGGSRETASLNSISPKPPPKLDEKLVTTPNLVRSRPSTSSHKSQGARPSDAARNSSLRREPNGLYTEPNRASTDHHQSYESKALVPTSSGNVMPLGHLGNLKPLRTGNSMITDLPDSTNKTRYYHQRKLSDSRIGSNGVMGNITRKPSNENPKSGGRFLGLLNKLDPEALKSMGNEEYKQGRFKEALALYNQAIALNANKASYHSNKSAALIGLGHLMEAVIECREAIQIEPSYHRAHHRLATLYLRLGEAEKALNHYKYSSPTDSEYIAKAQALQTHLSRCIEARNLRDWNTLLKEARCAISSGADSAPQIYAFQAEALLKLHRHQEAYATFRKGPKFQIDSCTQFFGPAASAYMLIIQAQLYMTMGRLEDAVALAQKAARLDSSNHEVTTVLRRVLAVESARLRGNQLFNASKFLEACVTYNEGLDHDPYNTILLCNRAACRSKLGQFEKAVEDCTMALIVQPSYSKARLRRANCNAKLERWEASIQDYEMLIRETPGDEEVGRALFEAKIQLKKQRGEDIKDMKFGSNLVFISNNERFRHFVTSPGMSVVLFCNKTSHKQVLQLLEQVCKRYPSVYFLKVEVEDHPYLAKSESVSSVPAFKIYKNGSRVKEIPGNNRELLESSVKLYSS* 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4283722 4287720 - Vvi18g393 Vvi18g393 780096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g393 685 Pfam Tetratricopeptide repeat 499 554 - -
Vvi18g393 685 ProSiteProfiles TPR repeat profile. 407 440 IPR019734 GO:0005515
Vvi18g393 685 MobiDBLite consensus disorder prediction 30 67 - -
Vvi18g393 685 MobiDBLite consensus disorder prediction 187 209 - -
Vvi18g393 685 CDD TRX_family 592 681 - -
Vvi18g393 685 MobiDBLite consensus disorder prediction 187 204 - -
Vvi18g393 685 Gene3D Tetratricopeptide repeat domain 219 573 IPR011990 GO:0005515
Vvi18g393 685 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 2 683 IPR044534 -
Vvi18g393 685 Pfam Tetratricopeptide repeat 411 439 IPR019734 GO:0005515
Vvi18g393 685 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 2 683 - -
Vvi18g393 685 MobiDBLite consensus disorder prediction 83 141 - -
Vvi18g393 685 SUPERFAMILY TPR-like 219 443 IPR011990 GO:0005515
Vvi18g393 685 Pfam TPR repeat 227 260 - -
Vvi18g393 685 SMART tpr_5 407 440 IPR019734 GO:0005515
Vvi18g393 685 SMART tpr_5 288 321 IPR019734 GO:0005515
Vvi18g393 685 SMART tpr_5 254 287 IPR019734 GO:0005515
Vvi18g393 685 SMART tpr_5 453 486 IPR019734 GO:0005515
Vvi18g393 685 SMART tpr_5 521 554 IPR019734 GO:0005515
Vvi18g393 685 SMART tpr_5 487 520 IPR019734 GO:0005515
Vvi18g393 685 SMART tpr_5 363 396 IPR019734 GO:0005515
Vvi18g393 685 SMART tpr_5 220 253 IPR019734 GO:0005515
Vvi18g393 685 SUPERFAMILY Thioredoxin-like 559 678 IPR036249 -
Vvi18g393 685 Pfam Thioredoxin 593 677 IPR013766 -
Vvi18g393 685 Gene3D Glutaredoxin 578 684 - -
Vvi18g393 685 SUPERFAMILY TPR-like 455 571 IPR011990 GO:0005515
Vvi18g393 685 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Vvi18g393 685 Coils Coil 527 547 - -
Vvi18g393 685 MobiDBLite consensus disorder prediction 23 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g393 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - vvi:100242128 1352.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39