Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g395 ATGAAGGCAGAGACGCTGACGTTGGTGTTGGTGAACCTAGCAGGCATAATGGAGAGAGCAGACGAGTCTCTGCTTTCAGGGGTGTACAAGGAAGTGGGTGCAGCCCTCCATACGGACCCAACTGGCCTGGGCTCCCTCACCCTTTTCAGGTCCATGGTGCAGGCCTCTTCCTATCCACTCGCCGTTTACCTGGCCGCCCGTCACAACCGCACCCACGTCATTGCTCTCGGCGCCTTCCTTTGGGCTGCCGCCACCTTCCTCGTCGCCTTCTCCTCCACCTTCTTCCAGGTGGCAGTATCAAGAGCTTTGAATGGGATTGGCCTTGCAATAGTTGGACCTGCAATTCAGTCCCTTATAGCTGACTCCACTGATGATCACAACCGTGGTATGGCTTTTGGATGGCTACAGCTGACAGGGAACCTTGGCTCAATTCTTGGTGGACTCTGTGCATTGTTGCTGGCCCAGACAACATTCATGGGAATCGCGGGTTGGAGAATTTCCTTCCATCTTGTTGGACTGGTCAGTGTTATTGTAGGTATTTTAGTCCGCCTCTTTGCCAATGACCCACACTTCCCAGATGGTGCTGCTAAAGCCAGTAACCAAGTTCCAAGTAAATCCATATGGTCTGAAGTGAAGGACCTGGTTCAGGAAGCCAAATCTGTCATCAAGATTACATCCTTCCAGATCATTGTGGCTCAGGGTGTCACCGGTTCATTCCCCTGGTCAGCTTTGTCATTTGCACCCATGTGGTTAGAGCTTATAGGCTTCTCTCATAAGAAAACCGCATTCCTCATAAGCTTATTTGTTATTGCTGCTTCCCTTGGGGGACTGTTTGGGGGTAGGATGGGGGATATTCTTTCCAGGATCCGCCCAGATTCTGGGAGGATAATTTTGGCACAGATAAGCTCACTGTCAGCCATCCCACTAGCAGCACTACTTCTGCTGGTTTTACCTGACAATCCATCCACTGCAGCCATGCATGGTTTGGTCTTGTTCATCATGGGGTTGTGCATATCCTGGAATGCTCCAGCTACAAACAATCCAATTTTTGCAGAGATAGTCCCTGAAAAATCTCGAACAAGTATCTATGCTTTGGATCGATCTTTCGAGTCCATATTGTCATCTTTTGCTCCACCTGTTGTTGGGATATTGGCTCAGCATGTTTATGGTTACAAACCGGTTCCCGAGGGATCCAGTGAATCGGAAGAGATAGCAACAGATAGAGGGAATGCTGCATCATTGGCCAAGGCACTGTACACAGCTATAGGAATTCCAATGGCTCTCTGTTGCCTCATCTATTCATTCCTATATTCCACTTATCCCAGAGACAAGGAACGGGCTCAGATGGAGGCTTTAATAGAATCAGAGATGCAACAGATGGAGTCGGACAATATATGTGCAGGAACAGAATATCCTCGAGCTCAGCTACTAGAATCAGAAGATGCCTATGTCAATGATAGGGGCGTCACTGAAATAGATTATGAAGGGAGGAGCAGTCCAGATTTTGAAGAAAATGATGACAAGATGTTACTTCACCACCAATTGACATTCTCCAACTTAGGGGAATAG 1569 48.31 MKAETLTLVLVNLAGIMERADESLLSGVYKEVGAALHTDPTGLGSLTLFRSMVQASSYPLAVYLAARHNRTHVIALGAFLWAAATFLVAFSSTFFQVAVSRALNGIGLAIVGPAIQSLIADSTDDHNRGMAFGWLQLTGNLGSILGGLCALLLAQTTFMGIAGWRISFHLVGLVSVIVGILVRLFANDPHFPDGAAKASNQVPSKSIWSEVKDLVQEAKSVIKITSFQIIVAQGVTGSFPWSALSFAPMWLELIGFSHKKTAFLISLFVIAASLGGLFGGRMGDILSRIRPDSGRIILAQISSLSAIPLAALLLLVLPDNPSTAAMHGLVLFIMGLCISWNAPATNNPIFAEIVPEKSRTSIYALDRSFESILSSFAPPVVGILAQHVYGYKPVPEGSSESEEIATDRGNAASLAKALYTAIGIPMALCCLIYSFLYSTYPRDKERAQMEALIESEMQQMESDNICAGTEYPRAQLLESEDAYVNDRGVTEIDYEGRSSPDFEENDDKMLLHHQLTFSNLGE* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4306813 4310127 + Vvi18g395 Vvi18g395 780098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g395 522 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 441 IPR020846 GO:0022857
Vvi18g395 522 PANTHER SPINSTER 1 514 IPR044770 -
Vvi18g395 522 SUPERFAMILY MFS general substrate transporter 6 446 IPR036259 -
Vvi18g395 522 CDD MFS_spinster_like 8 433 IPR044770 -
Vvi18g395 522 Pfam Major Facilitator Superfamily 13 378 IPR011701 GO:0022857|GO:0055085
Vvi18g395 522 PANTHER - 1 514 - -
Vvi18g395 522 Gene3D MFS general substrate transporter like domains 2 395 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g395 - - - vvi:100255818 978.393
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g395 . . . . Bpe02g00101 . . Bma01g02618 . . Cma01g01424 Cma09g00647 . . . Cpe06g00507 . . . . . . . . . . . . . . . Cone4ag1346 Cone7ag1585 . . Lsi04g02346 Csa03g04567 . . . . . . . . . . Sed12g1410 Cmo01g01473 Cmo09g00630 . . . Car09g00574 . Cpe02g00523 Bhi09g02610 Tan01g3960 Cmetu04g1462 . Hepe01g2239 Mch11g0787 . Cla11g01497 Cam11g1553 Cec11g1585 Cco11g1581 Clacu11g1711 Cmu11g1530 Cre11g1946 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001621 1 2 2 2 2 1 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 3 3 2 2 2 3 1 68