Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g396 ATGGCGAGAGTAATTGCTAAGTTCCCAACTGTGTTTGTCCCGGGTCAACTCGGTCAGCCCAGAGATCCTTTTTTCAAACCCTTGTTCTCACCGCCAACGGTCAACTTCGTTTTCGCGGCAAAACTTCGAGCATCTTCAACTCCTGCTGCCGTCGTCGTTGAAACCAAGCCGGATCCTATTTCAGTTGAAAAGGAGATTAGCATTGGCAAGAGCATTTTAGCTTGTCCCATTTGTTATCAACCATTCACATGGAATGGTGATCTAGGTTTATCAGTAGAATCTATGCCAGGGTCTAGTTTCCACTGTAGTTCTTGTAAGAAGGCATGCTTCGGTAATGAAACACATCTTGACCTGACAGTAGCCACTGGGGCCAAGGAGTATGATGAATCCATGCCAGCTGCAACAGAGATATTCAGGACTCCACTGATATCATTTCTCTATGAGAGGGGCTGGCGTCAAAATTTTATATGGGGTGGTTTTCCAGGTCTAGAGAAAGAGTTTGAATTGGCTAAAGGTTACCTTAAGCCAGTTCTAGGTGGAACTATTGTTGATGCTAGTTGTGGGAGTGGATTATTTTCAAGAACTTTTGCCAAGAGTGGATTATTTTCTCTTGTTGTTGCTCTGGACTTCTCAGAGAACATGCTACGACAATGTTATGAATTCATTAAGCAGGAGGAAGGCTTTCCCAAAGAGAATATACTCTTGGTCAGAGCTGATATCTCCAGACTTCCTTTTGCTTCAAGTTCAGTTGATGCTGTGCATGCTGGTGCGGCATTGCACTGTTGGCCCTCGCCCTCTATTGCTGTAGCTGAAATAAGCCGGGTTCTTCGCCCAGGAGGAGTTTTTGTTGCTACCACCTACTTGCTTGATGGCCCTTTTTCTGTGCTTCCTTTTCTTAAGACTCTGCGCCAGAATATGGTGCGAGTTGCAGGCAGCCATGCGTTCTTATCTGAACGTGAACTAGAAGATCTCTGCACAGCCTGTGGGTTAGGGGGTTTTACATGTGTGAGAAATGGGCGCTTTGTGATGATCTCAGCTACAAAACCTAGCTAA 1053 45.39 MARVIAKFPTVFVPGQLGQPRDPFFKPLFSPPTVNFVFAAKLRASSTPAAVVVETKPDPISVEKEISIGKSILACPICYQPFTWNGDLGLSVESMPGSSFHCSSCKKACFGNETHLDLTVATGAKEYDESMPAATEIFRTPLISFLYERGWRQNFIWGGFPGLEKEFELAKGYLKPVLGGTIVDASCGSGLFSRTFAKSGLFSLVVALDFSENMLRQCYEFIKQEEGFPKENILLVRADISRLPFASSSVDAVHAGAALHCWPSPSIAVAEISRVLRPGGVFVATTYLLDGPFSVLPFLKTLRQNMVRVAGSHAFLSERELEDLCTACGLGGFTCVRNGRFVMISATKPS* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4310331 4319333 - Vvi18g396 Vvi18g396 780099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g396 350 PANTHER METHYLTRANSFERASE 38 349 - -
Vvi18g396 350 CDD AdoMet_MTases 181 289 - -
Vvi18g396 350 Gene3D Vaccinia Virus protein VP39 137 348 IPR029063 -
Vvi18g396 350 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 146 349 IPR029063 -
Vvi18g396 350 Pfam Methyltransferase domain 184 283 IPR013216 GO:0008168
Vvi18g396 350 PANTHER OS08G0411200 PROTEIN 38 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g396 - - - vvi:100252381 710.294
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g396 . Blo12g00703 . Bda03g00494 . Bpe04g00450 . . . . . Cma09g00646 . . . Cpe06g00506 . . . . . . . . . . . . . . . Cone4ag1345 Cone7ag1586 . . Lsi04g02345 Csa03g04566 . . . . . . . . . . Sed04g0529 . Cmo09g00629 . . . Car09g00573 . . Bhi09g02609 Tan01g3959 . . Hepe01g2238 Mch11g0785 . Cla11g01496 Cam11g1552 Cec11g1584 Cco11g1580 Clacu11g1710 Cmu11g1529 Cre11g1945 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005033 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 2 1 1 1 1 6 2 1 40