Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g399 ATGATGAATCCTTTTGGAAATTACCTTATGCAGAAGTTGTTCGATGTGTGCAATGAAGACCAAAGAATGCAGATTGTGCTTGCATTGACAGAAGAACCAGGGGAGCTTGTGAGGATTTCCTTAAATGCGCATGGCACTCGAGTGGTGCAGAAGTTGGTGATGACTCTCAAAACAAGGCAGCAGATTTCATTAGTTGTATTAGCCCTTGAGCCATATTTTCTTGATCTCACTAAGGATCATCATGGAAATCATGTGGTGCAGCGGTGTTTGGAATACCTTAGCTGTGAAGACATTAAGTTTTTTTTTTATGATGCTGCTAAGTATTGTGTTGATATTGCAACTCATCGCCATGGGTGTTGTGTTCTCCAACGATGCATTACTCGTTCAACTGGGAAACATGGTGAGAAGTTGGTTGCAGAAATTTCTGCCAATGGACTCCTCCTGGCTCAAGATGATTTTGGGAATTATGTAATTCAATACATAATAGAGCTAAAAATCCCATCTGCCATAGCCAGCTTGATGTCTCAGTTCGAAGGGAACTATGTGCACCTGTCTATGCAGAAATTCAGCAGCCATGTGGTTGAAAAATGCCTCAAGCATCTTGAAGAGAGCAGGCCAAGAATCGTCCATGAATTTCTCTCAGTACCTCACTTTGAACAGTTGATGCAAGATCCATTTGCCAACTATGTCATTCAATCTGCACTTGAAGTCACAAAGGGTCCTCTCCATGCCTCATTGATTGAAGCAGTCCGACCCCATATAATCTTACGCACCAGCCCATATTGCAAGAAGATTTTCTCACGTACTCTCTTCAAGAAGTGA 822 42.09 MMNPFGNYLMQKLFDVCNEDQRMQIVLALTEEPGELVRISLNAHGTRVVQKLVMTLKTRQQISLVVLALEPYFLDLTKDHHGNHVVQRCLEYLSCEDIKFFFYDAAKYCVDIATHRHGCCVLQRCITRSTGKHGEKLVAEISANGLLLAQDDFGNYVIQYIIELKIPSAIASLMSQFEGNYVHLSMQKFSSHVVEKCLKHLEESRPRIVHEFLSVPHFEQLMQDPFANYVIQSALEVTKGPLHASLIEAVRPHIILRTSPYCKKIFSRTLFKK* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4332856 4337515 + Vvi18g399 Vvi18g399 780102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g399 273 CDD Pumilio 1 268 IPR033712 GO:0003723
Vvi18g399 273 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 1 273 - -
Vvi18g399 273 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 1 273 IPR033133 GO:0003723
Vvi18g399 273 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 1 273 - -
Vvi18g399 273 SMART pum_5 104 139 IPR001313 GO:0003723
Vvi18g399 273 SMART pum_5 213 248 IPR001313 GO:0003723
Vvi18g399 273 SMART pum_5 176 210 IPR001313 GO:0003723
Vvi18g399 273 SMART pum_5 1 27 IPR001313 GO:0003723
Vvi18g399 273 SMART pum_5 140 175 IPR001313 GO:0003723
Vvi18g399 273 SMART pum_5 31 66 IPR001313 GO:0003723
Vvi18g399 273 SMART pum_5 68 103 IPR001313 GO:0003723
Vvi18g399 273 SUPERFAMILY ARM repeat 1 268 IPR016024 -
Vvi18g399 273 ProSiteProfiles Pumilio RNA-binding repeat profile. 104 139 IPR001313 GO:0003723
Vvi18g399 273 Pfam Pumilio-family RNA binding repeat 148 163 IPR001313 GO:0003723
Vvi18g399 273 Pfam Pumilio-family RNA binding repeat 180 211 IPR001313 GO:0003723
Vvi18g399 273 Pfam Pumilio-family RNA binding repeat 37 60 IPR001313 GO:0003723
Vvi18g399 273 Pfam Pumilio-family RNA binding repeat 1 29 IPR001313 GO:0003723
Vvi18g399 273 Pfam Pumilio-family RNA binding repeat 108 142 IPR001313 GO:0003723
Vvi18g399 273 Pfam Pumilio-family RNA binding repeat 217 247 IPR001313 GO:0003723
Vvi18g399 273 Pfam Pumilio-family RNA binding repeat 73 99 IPR001313 GO:0003723
Vvi18g399 273 ProSiteProfiles Pumilio RNA-binding repeat profile. 31 67 IPR001313 GO:0003723
Vvi18g399 273 Gene3D - 1 271 IPR011989 -
Vvi18g399 273 ProSiteProfiles Pumilio RNA-binding repeat profile. 211 248 IPR001313 GO:0003723
Vvi18g399 273 ProSiteProfiles Pumilio RNA-binding repeat profile. 1 28 IPR001313 GO:0003723
Vvi18g399 273 ProSiteProfiles Pumilio RNA-binding repeat profile. 140 175 IPR001313 GO:0003723
Vvi18g399 273 ProSiteProfiles Pumilio RNA-binding repeat profile. 68 103 IPR001313 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g399 - - - vvi:100257510 552.747
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g399 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001451 2 5 2 1 1 1 6 2 1 2 1 1 4 2 2 4 1 3 4 2 2 2 2 2 2 2 2 5 2 3 71