Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g40 ATGGCGGAGAAGGGCAGAGTGTGTGTGACAGGCGCAGGAGGGTACATTGCTTCATGGGTCGTTAAGCTTCTTCTCTCCAAGGGCTACATTGTCCATGGAACTGTTAGAGATCCCAGTGATGAAAAGAATGCTCATTTGAAGAAACTTGAGAAAGCATCTGAGAACCTGAAACTCTTTAAGGCAGACTTGCTGGAGTACGGAGCTCTTTGTTCTGCCTTTGAAGGATGTGATGGAGTGTTCCATACTGCCAGTCCCGTCCCCCCTACAACTGTAGCAAATCCCGAGGTAGAATTAATGGAGCCTGCTGTGAAGGGCACTCTTAATGTACTTAAGGCATGTGCTGAAGCAAAAGTTAAACGGGTTGTTGTTGTGTCCTCTGGAGCTTCTGTTATCATGAATCCTAGGTGGCCCAAGGGTAAAGTAATGGACGAGACTTGCTGGTCTGATAAAGAATATTGCCGGGCAACTAAGAATTGGTATTGTCTTTCTAAAACAGAAGCAGAAAGTGTGGCCTTTGAGTATGCGAAAACAAGTGGGCTTGATGTTGTGACGGTTTGCCCTACCCTCGTTCTAGGGCCAATCCTGCAGTCCACTATCAATGCAAGTAGTTTGGTCCTCATTAAAATTTTGAAAGAAGGATACGAGACACTGGAAAACAAGTTTCGGATGATTGTAGATGTACGCGATGTTGCTGATGCTCTACTTATCACATATGAGAAGCCTGAAGCTGAAGGAAGATACATATGCACAGCACACATGATCAAGGCGCGGGATTTGGTGGAGAAGCTAAGGAGCATTTATCCCAACTACAATTATCCGAAGAATTTTACAGAGGTAGAGGAAGTGGAAAATCTGAGCTCAGAGAAACTGCAGAAGTTGGGATGGAGTTACAGGCCCCTGGAAGAATCCCTAGTCGACTCCATCAAAAGCTACAAGGAGGCTGGCATCTTGGATTAG 957 45.56 MAEKGRVCVTGAGGYIASWVVKLLLSKGYIVHGTVRDPSDEKNAHLKKLEKASENLKLFKADLLEYGALCSAFEGCDGVFHTASPVPPTTVANPEVELMEPAVKGTLNVLKACAEAKVKRVVVVSSGASVIMNPRWPKGKVMDETCWSDKEYCRATKNWYCLSKTEAESVAFEYAKTSGLDVVTVCPTLVLGPILQSTINASSLVLIKILKEGYETLENKFRMIVDVRDVADALLITYEKPEAEGRYICTAHMIKARDLVEKLRSIYPNYNYPKNFTEVEEVENLSSEKLQKLGWSYRPLEESLVDSIKSYKEAGILD* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 505113 509609 + Vvi18g40 Vvi18g40 779743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g40 318 Gene3D - 1 318 - -
Vvi18g40 318 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 312 IPR036291 -
Vvi18g40 318 CDD FR_SDR_e 7 295 - -
Vvi18g40 318 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 317 - -
Vvi18g40 318 Coils Coil 42 62 - -
Vvi18g40 318 Pfam NAD dependent epimerase/dehydratase family 7 244 IPR001509 -
Vvi18g40 318 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 317 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g40 - - vvi:100242793 638.647