Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g400	ATGGCGACTCTTTCCGTGACCGAAGATTGTGAGCAGCTCAGAAAAGCCTTCGCAGGATGGGGGACGAATGAAGGGTTGATCATATCCATATTGGCTCATAGAAATGCTGCTCAGATCAAGTCGATTCGGCAAACATATGCCCAAACTTATGGAGAAGATCTTCTCAAGGATTTGAACAAAGAACTTTCCAATGACTTCGAGAGGGTGGTATTGCTGTGGACACTTGATCCTGCTGAACGTGATGCCTTTTTGGCAAATGAACAAGCTTATCATGCTCGTTTTAAGAGATCCCTAGAAGAGGATGTTGCATATCACACAAGTGGGGACTTTCGCAAGCTTTTGGTACCTCTTGTGGGCACGTATCGATATGAGGGAGAGGAGGTGAACATGACTCTTGCAAAATCAGAGGCTAAGATACTCCATGAGAAGATTTCCGAGAAGGCTTACAATCATGAGGATGTCATCAGAATTTTGGCAACAAGGAGCAAAGCACAGATCAACGCAACACTGAATCACTACAAAAATGAATTTGGGAATGATATCAACAAGGATCTGAAAACTGACCCCAAGGACGAGTTCCTTGCAATATTGAGAGCCACTGTGAAGTGCTTGACCCGCCCAGAGAAGTACTTTGAGAAGGTTCTCAGGCTGGCAATCAACAAGCGAGGCACAGATGAAGGGGCTCTCACTAGAGTTGTCACTACAAGGGCTGAGATTGACATGAAGATCATAAAGGAGGAGTACCATAAAAGGAACAGCGTCACTCTGGATCATGCCATTGGCAAGGACACCACTGGAGACTATGAAAAAATGCTTCTGGCCCTGATAGGACACGGAGATGCTTGA	846	45.39	MATLSVTEDCEQLRKAFAGWGTNEGLIISILAHRNAAQIKSIRQTYAQTYGEDLLKDLNKELSNDFERVVLLWTLDPAERDAFLANEQAYHARFKRSLEEDVAYHTSGDFRKLLVPLVGTYRYEGEEVNMTLAKSEAKILHEKISEKAYNHEDVIRILATRSKAQINATLNHYKNEFGNDINKDLKTDPKDEFLAILRATVKCLTRPEKYFEKVLRLAINKRGTDEGALTRVVTTRAEIDMKIIKEEYHKRNSVTLDHAIGKDTTGDYEKMLLALIGHGDA*	282

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
18	4338563	4341668	-	Vvi18g400	Vvi18g400	780103

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi18g400	281	Pfam	Annexin	136	193	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	Pfam	Annexin	211	275	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	Pfam	Annexin	9	72	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	Pfam	Annexin	88	117	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	ProSitePatterns	Annexin repeat signature.	223	275	IPR018252	GO:0005509\|GO:0005544
Vvi18g400	281	PRINTS	Annexin family signature	18	40	IPR001464	GO:0005509\|GO:0005544
Vvi18g400	281	PRINTS	Annexin family signature	263	276	IPR001464	GO:0005509\|GO:0005544
Vvi18g400	281	ProSiteProfiles	Annexin repeat profile.	206	277	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	Gene3D	Annexin	74	126	IPR037104	GO:0005509\|GO:0005544
Vvi18g400	281	SUPERFAMILY	Annexin	4	280	IPR037104	GO:0005509\|GO:0005544
Vvi18g400	281	Gene3D	Annexin	206	281	IPR037104	GO:0005509\|GO:0005544
Vvi18g400	281	Gene3D	Annexin	2	73	IPR037104	GO:0005509\|GO:0005544
Vvi18g400	281	SMART	annex3	148	196	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	SMART	annex3	88	117	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	SMART	annex3	21	73	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	SMART	annex3	223	275	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	ProSiteProfiles	Annexin repeat profile.	4	75	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	Gene3D	Annexin	130	205	IPR037104	GO:0005509\|GO:0005544
Vvi18g400	281	PANTHER	ANNEXIN	88	281	-	-
Vvi18g400	281	PANTHER	ANNEXIN	5	88	-	-
Vvi18g400	281	ProSiteProfiles	Annexin repeat profile.	131	202	IPR018502	GO:0005509\|GO:0005544
Vvi18g400	281	PRINTS	Plant annexin signature	84	98	IPR009118	-
Vvi18g400	281	PRINTS	Plant annexin signature	126	146	IPR009118	-
Vvi18g400	281	PRINTS	Plant annexin signature	191	209	IPR009118	-
Vvi18g400	281	PANTHER	ANNEXIN D2	88	281	-	-
Vvi18g400	281	PANTHER	ANNEXIN D2	5	88	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g400	K17098	ANNAT; annexin D	-	vvi:100266093	543.502

WGDs- Genes

Select	Gene_1	Gene_2	Event_name
	Vvi3g1056	Vvi18g400	ECH

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi18g400	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cone6ag1562	Cone9ag1482	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0001965	1	3	3	2	1	2	3	2	2	2	2	2	3	2	3	3	2	4	3	2	2	2	2	2	2	2	1	3	2	1	66