Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g409 ATGTCAGGAGGTGGGTGTAGCATTGTTTGGTTCAGGAGAGATCTGAGGGTTGAGGATAATCCTGCACTAGCAGCTGGTGTGAGAGCAGGGGCTGTGATTCCTGTGTTTATATGGGCACCTGAAGAGGAAGGCCCCTATTACCCTGGGAGGGTCTCAAGATGGTGGCTCAAGCAGAGTTTGGCTCACCTTGATTCCTCTTTGAGGAGCCTTGGCACTCCTCTCATCACCAAGAGATCTACTGACTGCGTTTCTTCTCTCCTTGAGATTGTCAAATCTACCGGAGCTACTCTTCTCTTCTTCAATCATTTGTATGATCCCTTGTCACTTGTCAGGGATCACCGGGCAAAGGAGGCTTTAACTGCTCAAGGCATAGCTGTACATTCCTTTAACGCGGATTTGCTGTATGAACCATGGGATGTTAATGATGCCCAGGGCCACTCATTCACAACCTTCTCAGCTTTCTGGGACAGATGCCTTAGCATGCCCTATGACCCTGAGGCACCTCTCCTTCCTCCCAAAAGGATTAACCCGGGTGACGTGTCAAGGTGCCCCTCAGACACAATTGCATTTGAAGATGAATCTGAGAAGGGTAGCAATGCACTTCTTGCTCGAGCATGGACACCTGGATGGAGCAACGCTGATAAGGCCCTAACCATATTCATTAATGGACCATTAATTGAGTATTCTAAGAATAGTAGGAAGGCTGATAGTGCTACAACCTCATTTCTCTCTCCCCATTTGCATTTTGGGGAGGTGAGTGTGAGGAAAGTATTCCATCTTGTCCGCATCAAGCAGGTACTGTGGGCCAACGAAGGGAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTCCTTAAGTCCATTGGGCTTAGGGAATATTCAAGATACTTGAGTTTTAACCATCCTTACAGTCATGAAAGGCCACTTCTTGGACACCTGAAGTTCTTCCCTTGGGTTGTTGATGAAGGCTATTTTAAGGCATGGAGACAAGGTAGAACTGGATATCCATTGGTGGATGCTGGCATGAGAGAGCTATGGGCCACCGGTTGGATGCATGATCGGATAAGGGTTGTGGTTTCTAGTTTTTTTGTGAAGGTTTTGCAGCTTCCATGGCGGTGGGGAATGAAGTATTTCTGGGATACACTGTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTATATATCTGGTACTCTCCCTGATGGCCGTGAGTTTGATCGCATAGACAATCCACAGTTTGAGGGTTACAAATTCGACCCTAATGGAGAATATGTACGAAGGTGGCTCCCTGAACTTGCTAGGCTTCCTACTGAATGGATACACCACCCATGGAATGCACCAGAATCTGTACTCCAAGCTGCTGGAATTGAGTTGGGGTCAAACTACCCTCTCCCTATTGTAGAGATAGATGCAGCAAAAGCCAGGTTGCAAGAAGCACTTTCAGAGATGTGGCAAGCAGTAGCAGCTTCAAGAGCTGCAATTGAGAATGGAACCGAGGAGGGCCTTGGAGACTCTGAATCAGCCCCAATTGCCTTTCCTCAAGACGTACAAATGGAGGAGATTCCTGAGCCTGTGAGGAACAACCCTACCACTACTGCAGTTAGACGCTATGAGGATCAGATGGTTCCAAGCATGACTTCTTCTTTTCTAAGGATTGAAGGAGAACCATCTTTGGACATTCAAAATTCAGCAGAAAATAGCAGAGCAGAAGTCCCAACAAATGTTAATGCAAATCAAGAACCAAGAAGGGAAACTCTTAACCGAGGGGTTACACACTCAGTTCGAAGCAACAACCACAACCTGCCACAATTTAATATTATGATAGGGCGGAATACTGCTGAAGATTCCACAGCAGAATCTTCAAGCACCACAAGGAGAGAGAGGGATGGAGGTGTAGTTCCAGTTTGGTCTCCCTCAACTTCTAGTTATGCAGAGCAGTTTGTGAGTGAAGAGAATGGCATTGGAACCAGTTCATCTTACTTGCAGAGGCATCCACGGTCTCACCAGTTAATGAATTGGAAGCAACTTTCTCAAACTGGGTACAAGAATCTGGGAAGAGGAGAAAGTGACTAG 2076 46.72 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTDCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRINPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEALSEMWQAVAASRAAIENGTEEGLGDSESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYEDQMVPSMTSSFLRIEGEPSLDIQNSAENSRAEVPTNVNANQEPRRETLNRGVTHSVRSNNHNLPQFNIMIGRNTAEDSTAESSSTTRRERDGGVVPVWSPSTSSYAEQFVSEENGIGTSSSYLQRHPRSHQLMNWKQLSQTGYKNLGRGESD* 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4433240 4440087 + Vvi18g409 Vvi18g409 780112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g409 691 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Vvi18g409 691 Pfam DNA photolyase 7 163 IPR006050 -
Vvi18g409 691 PRINTS DNA photolyase signature 332 348 IPR002081 -
Vvi18g409 691 PRINTS DNA photolyase signature 352 370 IPR002081 -
Vvi18g409 691 PRINTS DNA photolyase signature 391 405 IPR002081 -
Vvi18g409 691 MobiDBLite consensus disorder prediction 611 639 - -
Vvi18g409 691 MobiDBLite consensus disorder prediction 564 585 - -
Vvi18g409 691 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Vvi18g409 691 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Vvi18g409 691 Pfam Blue/Ultraviolet sensing protein C terminal 509 626 IPR020978 -
Vvi18g409 691 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 482 IPR014134 GO:0009785|GO:0009882
Vvi18g409 691 Gene3D - 134 293 - -
Vvi18g409 691 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 486 IPR036134 -
Vvi18g409 691 PANTHER CRYPTOCHROME 1 604 IPR002081 -
Vvi18g409 691 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 177 IPR036155 -
Vvi18g409 691 PANTHER CRYPTOCHROME-1 1 604 - -
Vvi18g409 691 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Vvi18g409 691 Gene3D HUPs 8 206 IPR014729 -
Vvi18g409 691 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g409 K12118 CRY1; cryptochrome 1 - vvi:100254022 1386.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g409 . Blo12g00706 . . Bpe02g00107 Bpe04g00446 . . . . Cma01g01604 Cma09g00509 Car01g01224 . . Cpe06g00379 . . . . . . . . . . . . . . . Cone4ag1336 Cone7ag1593 . . Lsi04g02232 Csa03g04443 Chy04g00257 . . . Bda11g00766 . . . . . . Cmo01g01651 Cmo09g00506 . . . Car09g00443 . Cpe02g00374 Bhi09g02431 . . . . . . Cla11g01379 Cam11g1436 Cec11g1464 Cco11g1460 Clacu11g1595 Cmu11g1414 Cre11g1834 . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005916 1 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39