Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g410 ATGGGTAGGTTATGCTGTTTTAATGCCGCCTGTTCTCAGCTTGTAGGAGGAGCTTCCTCTTGTAGCTCTGGTAAAGGAAGAAGTCAAGAGGGTATGATCAAGTATGGTTTCAGCCTCGTAAAAGGGAAAGCTAATCATCCCATGGAGGATTATCATGTTGCTAAGTTTGTACAGATAGAAGAACATGAGCTTGGGTTGTTTGCTATTTATGATGGCCATTTGGGAGATCGTGTGCCCCTCTACCTACAAAAGCATTTGTTTTCCAATATCCTTAAAGAGGAAGAGTTTTGGGTTGATCCTGGAGGATCTATTTCAAAAGCCTATGAGAAAACAGACCAGGCAATTCTTGCTAACAGTTCCAACTTGGGACGAGGAGGGTCCACTGCCGTTACTGCAATTTTGATTAATGGTCGTAGATTATGGATTGCCAACGTGGGAGATTCACGAGCAGTTCTTTCTAAAGGGGGTCAGGCCATACAGATGACCACAGACCATGAACCCAACACTGAAAGAGGCAGCATTGAGAACAGAGGTGGTTTTGTTTCAAACATGCCAGGAGATGTCCCCAGAGTCAATGGGCAGCTGGCTGTTTCTCGGGCTTTTGGAGATAAGAGCCTTAAATCACACTTACGATCAGATCCTGACATACAAGATACTACTCTAGATTTCAACTCTGAAATTCTAATTCTTGCAAGTGATGGCCTTTGGAAGGTAATGAACAATCAAGAAGCGGTTGATATTGTGAGAAGAATCAAAGACCCTGAGAAGGCAGCTAAGCAACTAACTGCTGAAGCACTGAGAAGAGACAGTAAAGATGATATATCTTGTGTTGTGGTTAGATTTAGGGGATAA 852 43.08 MGRLCCFNAACSQLVGGASSCSSGKGRSQEGMIKYGFSLVKGKANHPMEDYHVAKFVQIEEHELGLFAIYDGHLGDRVPLYLQKHLFSNILKEEEFWVDPGGSISKAYEKTDQAILANSSNLGRGGSTAVTAILINGRRLWIANVGDSRAVLSKGGQAIQMTTDHEPNTERGSIENRGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQDTTLDFNSEILILASDGLWKVMNNQEAVDIVRRIKDPEKAAKQLTAEALRRDSKDDISCVVVRFRG* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4442136 4445561 + Vvi18g410 Vvi18g410 780113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g410 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Vvi18g410 283 CDD PP2Cc 33 281 IPR001932 -
Vvi18g410 283 PANTHER PROTEIN PHOSPHATASE 2C 5 282 IPR015655 GO:0004722|GO:0006470
Vvi18g410 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Vvi18g410 283 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi18g410 283 Gene3D - 29 283 IPR036457 -
Vvi18g410 283 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 5 282 - -
Vvi18g410 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Vvi18g410 283 SMART PP2C_4 30 279 IPR001932 -
Vvi18g410 283 SUPERFAMILY PP2C-like 29 282 IPR036457 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g410 K17506 - vvi:100259151 568.54