Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g412 ATGGAGGAAAGAGAGCAACAGGTTTACTTGGCTAGGCTTGCTGAGCAAGCTGAGAGATATGATGAGATGGTTGAAGCAATGAAGAAAGTTGCTAAATTGGATGTGGAACTGACAGTGGAGGAGAGGAATCTGGTATCTGTTGGATATAAAAATGTTATTGGGGCAAGAAGGGCATCATGGAGGATATTGTCTTCCATTGAACAGAAGGAGGAGACCAGGGGAAATGAGCAAAATGCAAAAAGGATAAAGGATTACAGACAAAGGGTTGAAGATGAGCTGTCAAAGATCTGCAATGACATATTGTCCGTCATTGATAATCATCTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGACTTGGGCTGGCTTTGAACTTTTCTGTCTTCTACTATGAAATTTTGAACTCCCCAGAGAGGGCTTGCCACCTTGCAAAACAAGCTTTTGATGAGGCTATTGCAGAACTTGATAGCCTGAATGAAGAATCATACAAGGATAGTACCCTTATTATGCAGCTTCTTCGGGATAATCTCACATTATGGACCTCAGATCTGCCAGAGGAGGGAGGTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGAGTTAG 759 43.21 MEEREQQVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEETRGNEQNAKRIKDYRQRVEDELSKICNDILSVIDNHLIPSSSTGESTVFYYKMKGDYYRYLAEFKAGNDRKEAADQSLKAYEAATSTAASDLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGETSKADEPQAES* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4453246 4457940 - Vvi18g412 Vvi18g412 780115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g412 252 Pfam 14-3-3 protein 10 232 IPR023410 -
Vvi18g412 252 PIRSF 14-3-3 1 247 IPR000308 -
Vvi18g412 252 Coils Coil 192 212 - -
Vvi18g412 252 PRINTS 14-3-3 protein zeta signature 36 65 IPR000308 -
Vvi18g412 252 PRINTS 14-3-3 protein zeta signature 85 109 IPR000308 -
Vvi18g412 252 PRINTS 14-3-3 protein zeta signature 116 138 IPR000308 -
Vvi18g412 252 PRINTS 14-3-3 protein zeta signature 151 177 IPR000308 -
Vvi18g412 252 PRINTS 14-3-3 protein zeta signature 178 204 IPR000308 -
Vvi18g412 252 PRINTS 14-3-3 protein zeta signature 205 234 IPR000308 -
Vvi18g412 252 Gene3D - 1 244 IPR036815 -
Vvi18g412 252 SMART 1433_4 4 245 IPR023410 -
Vvi18g412 252 Coils Coil 10 30 - -
Vvi18g412 252 ProSitePatterns 14-3-3 proteins signature 2. 214 233 IPR023409 -
Vvi18g412 252 ProSitePatterns 14-3-3 proteins signature 1. 42 52 IPR023409 -
Vvi18g412 252 SUPERFAMILY 14-3-3 protein 1 234 IPR036815 -
Vvi18g412 252 PANTHER 14-3-3-LIKE PROTEIN GF14 OMICRON 2 249 - -
Vvi18g412 252 PANTHER 14-3-3 PROTEIN 2 249 IPR000308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g412 K06630 YWHAE; 14-3-3 protein epsilon - vvi:100247183 495.738
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g888 Vvi18g412 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g412 . . . . . . . . Cmo05g00524 . Cma01g01607 . Car01g01226 . . . Cpe07g00087 Bhi04g00762 . . . Hepe10g0497 . Lcy13g1561 Cla08g01110 Cam08g1563 Cec08g1137 Cco08g1263 Clacu08g1267 . Cre08g1047 . . Cone8ag0206 Cone12ag0218 Lsi04g02235 Csa03g04446 Chy04g00255 Cme03g01863 . . . . . . . . . Cmo01g01654 . Cma12g00101 Cma05g00501 Car05g00448 . . Cpe02g00372 . . . . . . . Cla11g01382 Cam11g1440 Cec11g1466 Cco11g1462 Clacu11g1597 Cmu11g1416 Cre11g1836 Lsi08g00896 Csa02g02151 Chy03g01367 Cme04g00285
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi19g118 ECH 2 234 14-3-3 family AT4G09000 73.2 2.9e-93 339.0
Vvi10g212 ECH 4 238 14-3-3 family AT4G09000 70.9 3.2e-92 335.5
Vvi18g412 ECH 4 235 14-3-3 family AT4G09000 72.2 4.2e-92 335.1
Vvi1g51 . 1 231 14-3-3 family AT4G09000 73.0 9.7e-89 323.9
Vvi7g888 ECH 1 157 14-3-3 family AT4G09000 62.0 3.7e-64 242.3
Vvi18g442 . 1 141 14-3-3 family AT4G09000 60.2 1.4e-58 223.8
Vvi18g485 . 14 151 14-3-3 family AT4G09000 65.3 9.2e-55 211.1
Vvi14g902 . 1 112 14-3-3 family AT4G09000 90.2 1.9e-52 203.4
Vvi19g118 ECH 3 237 14-3-3 family AT1G78300 73.8 4.3e-95 344.7
Vvi10g212 ECH 7 241 14-3-3 family AT1G78300 71.7 6.9e-93 337.4
Vvi18g412 ECH 4 244 14-3-3 family AT1G78300 69.5 2.2e-91 332.4
Vvi1g51 . 1 249 14-3-3 family AT1G78300 69.3 1.6e-89 326.2
Vvi7g888 ECH 1 173 14-3-3 family AT1G78300 64.0 2.6e-71 265.8
Vvi18g442 . 1 160 14-3-3 family AT1G78300 62.9 2.5e-66 249.2
Vvi14g902 . 1 124 14-3-3 family AT1G78300 90.3 2.5e-58 222.6
Vvi18g485 . 32 152 14-3-3 family AT1G78300 87.6 2.3e-56 216.1
Vvi18g412 ECH 1 248 14-3-3 family AT5G38480 72.4 1.3e-96 349.7
Vvi10g212 ECH 7 242 14-3-3 family AT5G38480 72.9 9.8e-92 333.6
Vvi19g118 ECH 3 238 14-3-3 family AT5G38480 73.1 1.3e-91 333.2
Vvi1g51 . 1 249 14-3-3 family AT5G38480 70.5 3.5e-89 325.1
Vvi7g888 ECH 1 171 14-3-3 family AT5G38480 63.0 5.8e-68 254.6
Vvi18g442 . 1 155 14-3-3 family AT5G38480 59.6 1.7e-59 226.5
Vvi14g902 . 1 130 14-3-3 family AT5G38480 86.2 4.6e-57 218.4
Vvi18g485 . 30 156 14-3-3 family AT5G38480 82.7 1.6e-54 209.9
Vvi19g118 ECH 2 233 14-3-3 family AT1G35160 74.4 1.6e-93 339.7
Vvi18g412 ECH 4 235 14-3-3 family AT1G35160 73.1 7.9e-93 337.4
Vvi10g212 ECH 2 237 14-3-3 family AT1G35160 71.4 3.0e-92 335.5
Vvi1g51 . 1 231 14-3-3 family AT1G35160 72.5 1.5e-88 323.2
Vvi7g888 ECH 1 157 14-3-3 family AT1G35160 62.0 2.6e-64 242.7
Vvi18g442 . 1 141 14-3-3 family AT1G35160 61.1 2.0e-59 226.5
Vvi18g485 . 32 151 14-3-3 family AT1G35160 86.7 2.9e-55 212.6
Vvi14g902 . 1 111 14-3-3 family AT1G35160 92.8 2.7e-53 206.1
Vvi18g412 ECH 4 244 14-3-3 family AT5G16050 67.5 1.0e-86 317.0
Vvi19g118 ECH 2 239 14-3-3 family AT5G16050 67.5 1.4e-85 313.2
Vvi10g212 ECH 1 242 14-3-3 family AT5G16050 65.6 2.1e-84 309.3
Vvi1g51 . 27 238 14-3-3 family AT5G16050 71.2 8.2e-81 297.4
Vvi7g888 ECH 37 169 14-3-3 family AT5G16050 89.5 3.5e-63 238.8
Vvi14g902 . 1 125 14-3-3 family AT5G16050 92.0 8.0e-60 227.6
Vvi18g442 . 29 153 14-3-3 family AT5G16050 90.4 3.0e-59 225.7
Vvi18g485 . 29 153 14-3-3 family AT5G16050 86.4 2.2e-57 219.5
Vvi10g212 ECH 1 238 14-3-3 family AT5G10450 67.2 3.2e-88 322.0
Vvi18g412 ECH 4 235 14-3-3 family AT5G10450 67.7 4.6e-87 318.2
Vvi19g118 ECH 1 251 14-3-3 family AT5G10450 63.4 1.0e-86 317.0
Vvi1g51 . 1 231 14-3-3 family AT5G10450 67.9 5.2e-83 304.7
Vvi7g888 ECH 1 170 14-3-3 family AT5G10450 55.6 3.7e-60 228.8
Vvi18g485 . 1 151 14-3-3 family AT5G10450 59.9 9.0e-59 224.2
Vvi18g442 . 29 150 14-3-3 family AT5G10450 81.1 4.8e-52 201.8
Vvi14g902 . 1 127 14-3-3 family AT5G10450 77.7 9.0e-51 197.6
Vvi18g412 ECH 4 240 14-3-3 family AT3G02520 73.6 4.4e-95 344.7
Vvi19g118 ECH 2 239 14-3-3 family AT3G02520 73.3 2.9e-94 342.0
Vvi10g212 ECH 4 238 14-3-3 family AT3G02520 73.0 1.2e-92 336.7
Vvi1g51 . 1 252 14-3-3 family AT3G02520 68.5 7.3e-90 327.4
Vvi7g888 ECH 1 173 14-3-3 family AT3G02520 62.2 6.5e-70 261.2
Vvi14g902 . 1 133 14-3-3 family AT3G02520 89.6 2.5e-61 232.6
Vvi18g442 . 1 158 14-3-3 family AT3G02520 58.5 5.5e-61 231.5
Vvi18g485 . 29 153 14-3-3 family AT3G02520 84.8 1.8e-56 216.5
Vvi10g212 ECH 1 238 14-3-3 family AT5G65430 68.0 8.0e-89 323.9
Vvi19g118 ECH 1 259 14-3-3 family AT5G65430 63.7 1.4e-88 323.2
Vvi18g412 ECH 4 235 14-3-3 family AT5G65430 69.4 3.0e-88 322.0
Vvi1g51 . 1 231 14-3-3 family AT5G65430 69.2 6.5e-83 304.3
Vvi18g485 . 1 151 14-3-3 family AT5G65430 60.4 1.0e-59 227.3
Vvi7g888 ECH 1 157 14-3-3 family AT5G65430 57.4 1.1e-58 223.8
Vvi18g442 . 18 141 14-3-3 family AT5G65430 80.6 1.3e-51 200.3
Vvi14g902 . 1 112 14-3-3 family AT5G65430 83.0 4.3e-50 195.3
Vvi10g212 ECH 1 264 14-3-3 family AT2G42590 78.2 1.4e-112 402.9
Vvi19g118 ECH 3 239 14-3-3 family AT2G42590 82.7 8.7e-110 393.7
Vvi18g412 ECH 2 241 14-3-3 family AT2G42590 79.6 4.0e-107 384.8
Vvi1g51 . 1 241 14-3-3 family AT2G42590 75.5 6.9e-99 357.5
Vvi7g888 ECH 16 163 14-3-3 family AT2G42590 65.6 1.4e-51 200.3
Vvi18g442 . 3 147 14-3-3 family AT2G42590 64.2 2.2e-49 193.0
Vvi14g902 . 1 119 14-3-3 family AT2G42590 79.0 1.5e-48 190.3
Vvi18g485 . 32 153 14-3-3 family AT2G42590 72.1 2.3e-46 183.0
Vvi18g412 ECH 3 240 14-3-3 family AT1G22300 84.0 1.0e-109 393.3
Vvi19g118 ECH 3 240 14-3-3 family AT1G22300 77.7 9.3e-103 370.2
Vvi10g212 ECH 11 238 14-3-3 family AT1G22300 78.9 5.7e-100 360.9
Vvi1g51 . 1 236 14-3-3 family AT1G22300 75.0 1.7e-96 349.4
Vvi7g888 ECH 1 161 14-3-3 family AT1G22300 51.1 6.4e-51 198.0
Vvi18g442 . 29 145 14-3-3 family AT1G22300 77.8 7.3e-47 184.5
Vvi14g902 . 1 117 14-3-3 family AT1G22300 75.2 1.5e-44 176.8
Vvi18g485 . 32 153 14-3-3 family AT1G22300 71.3 5.8e-44 174.9
Vvi18g412 ECH 3 253 14-3-3 family AT1G34760 83.7 4.2e-111 397.9
Vvi19g118 ECH 7 238 14-3-3 family AT1G34760 81.0 2.5e-103 372.1
Vvi10g212 ECH 11 245 14-3-3 family AT1G34760 78.7 1.0e-101 366.7
Vvi1g51 . 1 237 14-3-3 family AT1G34760 79.3 2.2e-99 359.0
Vvi7g888 ECH 1 172 14-3-3 family AT1G34760 50.8 3.2e-50 195.7
Vvi18g442 . 29 144 14-3-3 family AT1G34760 76.7 1.4e-45 180.3
Vvi14g902 . 1 114 14-3-3 family AT1G34760 75.4 6.4e-43 171.4
Vvi18g485 . 32 152 14-3-3 family AT1G34760 69.4 5.4e-42 168.3
Vvi1g51 . 1 246 14-3-3 family AT1G26480 86.6 6.2e-113 404.1
Vvi18g412 ECH 3 241 14-3-3 family AT1G26480 80.8 1.1e-106 383.3
Vvi19g118 ECH 3 239 14-3-3 family AT1G26480 81.4 2.5e-106 382.1
Vvi10g212 ECH 3 244 14-3-3 family AT1G26480 77.3 2.0e-103 372.5
Vvi7g888 ECH 1 165 14-3-3 family AT1G26480 53.8 9.5e-53 204.1
Vvi18g442 . 29 149 14-3-3 family AT1G26480 78.7 7.8e-47 184.5
Vvi14g902 . 1 127 14-3-3 family AT1G26480 76.0 8.6e-46 181.0
Vvi18g485 . 34 149 14-3-3 family AT1G26480 74.1 5.2e-43 171.8
Vvi18g412 ECH 3 233 14-3-3 family AT1G78220 52.6 2.6e-65 245.7
Vvi19g118 ECH 3 232 14-3-3 family AT1G78220 51.5 1.1e-63 240.4
Vvi10g212 ECH 6 236 14-3-3 family AT1G78220 51.3 1.4e-63 240.0
Vvi1g51 . 1 229 14-3-3 family AT1G78220 50.4 2.8e-59 225.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148