Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g414 ATGTCCATGGCCTCCTCCTCCTCCACAGCCTCCGGCGGTCTCCACCTGGAGGCGTTGCCACTCATCGATCTCCGCTTCCTTTCCCAATCAGAACTCCAGGCCCTCTCTCTCACTTCTTCACACTCCTCCGATCTCCGCCGCTGCGACGACGTTGTCATCCCCAAAATTGACCGCTCCATCTTCAATGAAAGCGCCGGTAGCCGAAAACAGACATACTCTCGCCTCCGCCTCGCCCCTCGCAAGCCCGATATCGCTGCCACCATTCCCCGCCGGCCCAGATTCTCCCCCCACCTTAACCAGAAAGCTGCCCTTGAGCCCGTCGATGAAGAAAACACCTTAATTATCGGACTCCTTAAAGGCTTGTTCGCTACCGAGACTCACGCCGATGACCTAATCCCGGTTCAAGTCGAATATAGGGAATCCGGTGAAGGTGGGGGTATGGGGATTATAAATAATAATGGTGTCGTCGTAGATGTTGCGGCTTTGGCGAATGCGGAGGACCCTTTTGGTCCGGAATTGAGGAGGAGGACAGAGGGTTTGACCACAGAGGAAGAGTTGTTAGGGTTCTTGACGGGTCTGAGTGGGCAATGGGGGAGTAGGAGGAAGAAGAGGAAGATTGTGGAGGCAAGTGATTTCGGAGATGTATTGCCCCAGGGTTGGAAGCTTTTGCTCTCTATGAAGAGGAAAGAAGGCCGCGTCTGGTTATTCTGTCGCAGATACATAAGCCCTAATGGGCAGCAGTTTGTGTCCTGCAAGGAAGTTTCTTCATGTTTGCTTTCTTTGTCTGGACTCCAAGATGCAAGACAGCCAAATTATGGTCACAATGATGAGAATAGTCAACTTGCCCATCAAATTTCTCCTGGAAATGCAGCTGGTCTTACCCTCAAAGATGACAATAGTAAGGATGGTCTTGTTTGCTCTTCACCATCAACCGTTACTACTATACCAACTCATCATGAGAAGCAAGCCACCTTATTGAACATGGGTAATTCATGGGAGGTCAAAGTGGGGGAAATTTTAAAATGCCATAAATGTGCCATGACATTTGATGAGAAGGATGATTTATTGCACCACCTATCATCATCTCACAATGGGACTGCAAATAGCTGTAAACTCAGTTCATCCATCTGCAATGAGGTGATAATGAAAGAGGGAAAATATGAATGTCGGTTCTGCCATGAGATATTCCATGAAGAGAATGGTTACAATCGCCATGTTGAGATCCACACAAAAACATCTGTTAAGAACGCTGAAACATCAGTGCTAAATAGTGATCCCACTCCCTTGGATGGACTTGTCAGTGATTCTATTGAGAAAACTACAAATGGCCAAGCCAATGATGGAATGAGTTTTGGTCTTACCCATAAGACACCAAAAGCAGATTCTATTAAAGAAACTCATATTGGCAAATCCAATAATTCTTTCTTTCATATGGGGCAGCACTTTGAGGTGACCCAAAATGATGGAACTTTTGCTGACGAATCTGTTGACGAGCAGGATAAAGATTGTAATACAAGAAATGATAGACTGGGGAAGGTGCATGAGGCTCCTGATATTTTAGCTGCTAAAACTAGTCTTGCTGAAGCTGCCTTGTCCACAAGTGAGGATAGAAGTATTCAGAAAGCTTCCAATGAGTCAAATGTTCTCAAATGCCCCACAGATGGAATCAATGAATTATGTGGCAGCGAGGAAAGAATTTCTGAAAGTTATTCAGTTGCTCCTTCTGAAAATCAGCAAACATGCGAGGTTGAAGACAATGTGCATGGTGCTTCCACTAGCTTAAAGAAAGAGCTCAGGCAGGAGATAAGTTATGAAAGTGGTCTAGCTACTCCAAATGATAAAGGAGAGATATGTGCTGAAATTGCCGAGGATAGGCTTTTTACTAGCACAATCAAAGAGATGAAAATTGACTGCAAGGATGAATTTGGGCAACATAAGCCAATATTTGATTTTGACAATTGTGCTACATATGGTAAAGATATTGCAATTAATGTCAAGCAGCAAAGAGTTTCTGAAGACTGCCATTTGCCTGTTCCTTTCCCAAACGAGCAAAAATGTGGTTTTGTTAATAATATGAATGGAGTTTTATCTCCTCCCATAGTGGAGTCCAATCAGCAAAGATGTTCTAAAAGCGTCACTCTATCTGGCAATAACCAGACATATGATGTCAACAATAATGGCAGTTGGGTTTCTACTGGCACTGGCAGGCCTAGAGTTGAAGCGGACAACTCTGGGAATAATGAACTAACATTTGGCTTTGGTAGCAATCACCCTCAGCCTAATGAGGATGCTGTGACCTGTGTTGAGTGGGGAATAAGTTCTGGAAGCTGTTCTCTTGTTTCATCCTGGAAGGATCAAACATGCTTTAAAAATAACACCAATTGGGTTTCTGCTTGCACAAAACCCCTGCAGGAAAAAGGTTCTGAAAGTGGTGCTCTCACTCCATCTTGTAAGGAACAAATATGGGGCGTTGAAAATAATGGGAATAAGTTTTCCATTGGCACAATGGATAAGCTCAAATTTGATGAAATAAACAACTCTAGGAATAGTGAGCTAATCATTACTTCTGGCAACATGAGCAACACTGGAGTAGGTATGGATGTTGTGACAAGTGTTCAGAAGCAAAGAGGATCTGAAGGTTATTTATCTATTCTTTCTAAGAATGAGCAAAAAATTGGTGCTGAAAGTCCTGTTACTGGGTTTTGCAATAGTGCAGTGGCAGAGCTCAAACTGGGAGGACATTCTGAGAGTGGATTTTGTATTCAATCTGATGGTGAGCAAAAATGCGGCATTGGTAATGATTTGAAGAGGGTTTATCCTGGAAGATTCTGGGAGGTTCCAAGACTTAGGGAAGTAGAAAATCCTAGTAATACTGAGCTGATGATTGGTTTCGGCAGCAGTCATGCCCAACCTGGTCAGGACGTCATGGCTGAGGTTATGTGGAGAAGTGATGAAGAAAATGTGCTGCAGAGTGCTTTAGGCAATTCTTCATCTTCAATGGTGCTTTCATCCAGTTGCTTTCCCACATTTGATGTAATCTCAGATAAGGGGTTAAATGGACTCTGTACTGCAAATGAGAAGTTCAACACTGATAGCATAGAAAATCTGAAATTCAGTTCTCTGACTGCACAAAGAAACTCTCTTTCAGAAGATTCCAAAGTATTGTCATATGATGCAGGGATGGAACAAGGGTTCAATTCTTCTGAATGGCTTGAAAAGGAAACTTTGTTGCCAAAAGTAGCTGGGAGGCATCTGGTTGCCGCATTATGCATCTGGTGCAGAAATGAGTTCCATCATGAGAATGTTGGCAATGCAACACAAACAGGTTCAACTGGTTTAATGTGTCCAACCTGCAAGGTTAAGTTCCCAGGGGAACTCAATTTATTCTAG 3390 43.57 MSMASSSSTASGGLHLEALPLIDLRFLSQSELQALSLTSSHSSDLRRCDDVVIPKIDRSIFNESAGSRKQTYSRLRLAPRKPDIAATIPRRPRFSPHLNQKAALEPVDEENTLIIGLLKGLFATETHADDLIPVQVEYRESGEGGGMGIINNNGVVVDVAALANAEDPFGPELRRRTEGLTTEEELLGFLTGLSGQWGSRRKKRKIVEASDFGDVLPQGWKLLLSMKRKEGRVWLFCRRYISPNGQQFVSCKEVSSCLLSLSGLQDARQPNYGHNDENSQLAHQISPGNAAGLTLKDDNSKDGLVCSSPSTVTTIPTHHEKQATLLNMGNSWEVKVGEILKCHKCAMTFDEKDDLLHHLSSSHNGTANSCKLSSSICNEVIMKEGKYECRFCHEIFHEENGYNRHVEIHTKTSVKNAETSVLNSDPTPLDGLVSDSIEKTTNGQANDGMSFGLTHKTPKADSIKETHIGKSNNSFFHMGQHFEVTQNDGTFADESVDEQDKDCNTRNDRLGKVHEAPDILAAKTSLAEAALSTSEDRSIQKASNESNVLKCPTDGINELCGSEERISESYSVAPSENQQTCEVEDNVHGASTSLKKELRQEISYESGLATPNDKGEICAEIAEDRLFTSTIKEMKIDCKDEFGQHKPIFDFDNCATYGKDIAINVKQQRVSEDCHLPVPFPNEQKCGFVNNMNGVLSPPIVESNQQRCSKSVTLSGNNQTYDVNNNGSWVSTGTGRPRVEADNSGNNELTFGFGSNHPQPNEDAVTCVEWGISSGSCSLVSSWKDQTCFKNNTNWVSACTKPLQEKGSESGALTPSCKEQIWGVENNGNKFSIGTMDKLKFDEINNSRNSELIITSGNMSNTGVGMDVVTSVQKQRGSEGYLSILSKNEQKIGAESPVTGFCNSAVAELKLGGHSESGFCIQSDGEQKCGIGNDLKRVYPGRFWEVPRLREVENPSNTELMIGFGSSHAQPGQDVMAEVMWRSDEENVLQSALGNSSSSMVLSSSCFPTFDVISDKGLNGLCTANEKFNTDSIENLKFSSLTAQRNSLSEDSKVLSYDAGMEQGFNSSEWLEKETLLPKVAGRHLVAALCIWCRNEFHHENVGNATQTGSTGLMCPTCKVKFPGELNLF* 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4466929 4475029 - Vvi18g414 Vvi18g414 780117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g414 1129 ProSiteProfiles Zinc finger C2H2 type domain profile. 387 414 IPR013087 -
Vvi18g414 1129 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 3 1128 IPR037472 -
Vvi18g414 1129 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 3 1128 - -
Vvi18g414 1129 SUPERFAMILY DNA-binding domain 211 260 IPR016177 GO:0003677
Vvi18g414 1129 SMART c2h2final6 387 409 IPR013087 -
Vvi18g414 1129 SMART c2h2final6 340 363 IPR013087 -
Vvi18g414 1129 ProSitePatterns Zinc finger C2H2 type domain signature. 389 409 IPR013087 -
Vvi18g414 1129 ProSitePatterns Zinc finger C2H2 type domain signature. 342 363 IPR013087 -
Vvi18g414 1129 ProSiteProfiles Zinc finger C2H2 type domain profile. 340 368 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g414 - - - vvi:100248904 2191.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g414 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01114 Cam08g1570 Cec08g1140 Cco08g1267 Clacu08g1271 . Cre08g1052 . Cone7ag1595 Cone17ag1216 Cone20ag0509 . . . . . . . Bda13g01400 . Bpe14g00455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006623 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14327 None None None None Vvi TF