Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g415 ATGACAATTTTCAATTGCTTCTCCGCACTGGTTGGGAAGAAGAAGAAGAAAGACAAGGAAGACGAGGAATCTTCAAAAACCGTTGATCACAAAAAGGGAGTTAGAACTATGGAAGTGAAGCTGGAACACCCTTTGAAATCTTCCAAACCAGAGGAGTTAAATACAACTTCTTTTAGTGTCTCAGTACCTTTTGATATCAAGGGGAGTTCTACATGCAAGGTCAAGGTAATGAGCCATGAGAGTCCCATTGAAGGTGAAGCAGTGGAGGTAGCTTATGAAGGAGAAGACGAGCACGAAGATAACTCCTCCATCAAGAGGGAACTCTCGGATTTTGATCTCCAAACCCATGTAGCTAATGCAGGAGAAGAAGAATTTCAATTGAGACACAGAAACATGAATTATTCTGATTCATTTGATATTGAAAATGGACATGTAAGTGATCCGGGCATACCCAAGGCAGATTTCTGGGCTTCACCCAAGCTTAAGCGCTCCTGTTCTAATTTAGAGTCGAGGGATGGTTTAGCCGATGGGGCAAGGGAGGATGTTTTTCCGAGGAATCCTGGCAGCCCAGGGTCTGTATTGAGTCGTCGCAGTGCAGACAGAGTGATGTTGAAGAAGCGCTCTTCAAGCCAAGTTTTGCCTTCAAGGAGTAGAAGATTGTGGTGGAAATTATTCCTTTGGAGCCACAGGAACCTCCACAAACCATGGACTACAAAGCCACGCCCACTTCCCATCGCTGCTGCTTTCAACCAGCAAGGGGGGTACTGTTCGGATACCCTTGAACCAAATCGAGCTCTGCACTGGGATGGCTTTCATGGTAGAACTTCTGGTTTATGGCCCCAGAATCACTGGGTTGCTTTCTCGGCAGAATCATCACCCTTTGCAAGAGTTGATGAATGGGTGAAAGATCTGGAAACCCAACCCCCGTTGCCAGTTGACAATGATGACAACAATGTTGAAGATATCATCTTCCCACCGTCTCCTGAGACAGGTAGATCACCGGCTAGAAGTACAGCACACCTGACTCGGCATCCAAATACCAATCTTTCAGAGGAAATATTACATGCCAATAGTGTGATCCAGTCTCTGAATTCTTCTTCAACTGTGGCTCACATCTCTGGTATTGGTTTAAAAGTTATTCCCACCATATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAGTCCATATCACACCTGGATCACTGCCAAAGGGCCTTCACATCCTCAATTTGTCCAGAAACAAGATCAGCACCATTGAAGGACTCAGAGAATTAACCCGATTGCGGGTGCTTGATCTCAGTTACAATCGGATCTCCCGAATTGGGCATGGGTTGTCAAATTGTACGCTTATCAAGGAGCTCTATCTTGCGGGAAACAAGATTAGTGATGTTGAAGCCTTACATCGGCTCTTGAAGCTGACAGTCTTGGACCTTAGCTTCAACAAGATAACCACCACAAAATCGCTGGGCCAACTTGTGGCTAATTACAACTCCTTGCTGGCTCTGAACCTGCTGGGAAATCCAATCCAAAGCAACATCAGTGACGACCAAATCCGCAAGGCAGTTGGCAGTCTCCTCCCAAAGTTAGCTTACCTCAACAAGCAGCCCATCAAACCACAAAGAGCACGAGAGGTGGCCACAGATAGTGTTGCCAAAGCGGCACTTGGGTACAGTGGCCAGAGCTCTCGCCGGAGGGCAGTGAAGAGGGTGAGCCAAGGTGGTTCACTTGTCTCCAGTGGGCATAGGAGCAGTGCGAGTGTTGGGCATAAGAGCAGGACCAGTTTCTGGAATATGCATCCCTTTAATCTTAAGGCATGTTGTTGA 1839 46.55 MTIFNCFSALVGKKKKKDKEDEESSKTVDHKKGVRTMEVKLEHPLKSSKPEELNTTSFSVSVPFDIKGSSTCKVKVMSHESPIEGEAVEVAYEGEDEHEDNSSIKRELSDFDLQTHVANAGEEEFQLRHRNMNYSDSFDIENGHVSDPGIPKADFWASPKLKRSCSNLESRDGLADGAREDVFPRNPGSPGSVLSRRSADRVMLKKRSSSQVLPSRSRRLWWKLFLWSHRNLHKPWTTKPRPLPIAAAFNQQGGYCSDTLEPNRALHWDGFHGRTSGLWPQNHWVAFSAESSPFARVDEWVKDLETQPPLPVDNDDNNVEDIIFPPSPETGRSPARSTAHLTRHPNTNLSEEILHANSVIQSLNSSSTVAHISGIGLKVIPTISHFSSLRSVNLSSNYIVHITPGSLPKGLHILNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGHGLSNCTLIKELYLAGNKISDVEALHRLLKLTVLDLSFNKITTTKSLGQLVANYNSLLALNLLGNPIQSNISDDQIRKAVGSLLPKLAYLNKQPIKPQRAREVATDSVAKAALGYSGQSSRRRAVKRVSQGGSLVSSGHRSSASVGHKSRTSFWNMHPFNLKACC* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4483320 4486706 + Vvi18g415 Vvi18g415 780118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g415 612 SUPERFAMILY Outer arm dynein light chain 1 377 544 - -
Vvi18g415 612 MobiDBLite consensus disorder prediction 13 49 - -
Vvi18g415 612 Pfam Leucine rich repeat 388 443 IPR001611 GO:0005515
Vvi18g415 612 Pfam Leucine Rich repeat 477 489 IPR001611 GO:0005515
Vvi18g415 612 ProSiteProfiles Leucine-rich repeat profile. 432 454 IPR001611 GO:0005515
Vvi18g415 612 ProSiteProfiles Leucine-rich repeat profile. 455 476 IPR001611 GO:0005515
Vvi18g415 612 Gene3D Ribonuclease Inhibitor 335 447 IPR032675 -
Vvi18g415 612 SMART LRR_sd22_2 453 474 - -
Vvi18g415 612 SMART LRR_sd22_2 430 452 - -
Vvi18g415 612 SMART LRR_sd22_2 475 496 - -
Vvi18g415 612 SMART LRR_sd22_2 408 429 - -
Vvi18g415 612 Gene3D Ribonuclease Inhibitor 448 548 IPR032675 -
Vvi18g415 612 ProSiteProfiles Leucine-rich repeat profile. 410 431 IPR001611 GO:0005515
Vvi18g415 612 MobiDBLite consensus disorder prediction 13 53 - -
Vvi18g415 612 MobiDBLite consensus disorder prediction 168 200 - -
Vvi18g415 612 MobiDBLite consensus disorder prediction 567 594 - -
Vvi18g415 612 MobiDBLite consensus disorder prediction 308 342 - -
Vvi18g415 612 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 600 - -
Vvi18g415 612 PANTHER NISCHARIN RELATED 3 600 - -
Vvi18g415 612 SMART LRR_typ_2 386 409 IPR003591 -
Vvi18g415 612 SMART LRR_typ_2 475 497 IPR003591 -
Vvi18g415 612 SMART LRR_typ_2 430 453 IPR003591 -
Vvi18g415 612 ProSiteProfiles Leucine-rich repeat profile. 477 498 IPR001611 GO:0005515
Vvi18g415 612 MobiDBLite consensus disorder prediction 569 594 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g415 - - - vvi:100252301 1111.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34