Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g419 ATGGAGCCCTCGGATATTCCGTTTAGTTCTAATCCCTCAGCTTGTTCGTCTTCCCATGATAATATCTACAACGAGCTCCTCAATCTATTTCCAGACACTCGCCCAAATTCCCTCGAGCCACTACCACTGCCAAGCAGCTTGCTGTGCTCACCAAAAGCAGTGCCACTGGAAGGAAATACAAAAGCATCCAATGAAGATACTGGGGATGTCACCGTGACCTTATGCATTGGTCTTCCTGATAATAAGGATGGTTCCAAGAATGCAGTTGATAAAAGAGATTCAGATATAGCGGCTACCCAGTACTGGATACCCACACCTGCACAAATCCTCATTGGCTTCACCCACTTTTCGTGCCACATCTGCAACAAAACTTTCAACCGCTACAACAATCTCCAGATGCATATGTGGGGTCATGGATCACAGTATCGTAAAGGACCCGAATCATTGAAAGGAACCCAACCACGAGCTGTTCTAAGCATCCCATGCTACTGTTGCACACAAGGGTGCAAAAACAACATAGACCACCCAAGGGCAAAGCCGCTGAAGGATTTCCGAACCTTGCAGACGCATTACAAGAGGAAGCATGGTATGAAGCCTTTCATGTGTCGGAAATGTGGAAAGTGCTTGGCTGTGAAAGGTGACTGGCGAACTCACGAGAAGAATTGCGGCAAGCGTTGGCTTTGCGCGTGTGGTTCGGACTTCAAACACAAGAGATCACTCAAAGACCACATTAAAGCATTTGGATCTGGTCACGGCCCATTTCCTCCTCCATTTGAAGGAGTCCAGCTCCGAGAGGATGCTGTGCCTTTTCCGTTTCTCATCAACAAGCAGCGATCTTTAGTCCCTTCAATGAATTCTTTAGGTAATGTAGCCGAGTTTCCCAACACAATATCAGGTCGAAGAACCCACTATTTGCAAGCCCCCATGCAAACTCTATCAGCTGTTGATCTGTCAACAATGCAATCCTTCTAA 972 46.81 MEPSDIPFSSNPSACSSSHDNIYNELLNLFPDTRPNSLEPLPLPSSLLCSPKAVPLEGNTKASNEDTGDVTVTLCIGLPDNKDGSKNAVDKRDSDIAATQYWIPTPAQILIGFTHFSCHICNKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAVLSIPCYCCTQGCKNNIDHPRAKPLKDFRTLQTHYKRKHGMKPFMCRKCGKCLAVKGDWRTHEKNCGKRWLCACGSDFKHKRSLKDHIKAFGSGHGPFPPPFEGVQLREDAVPFPFLINKQRSLVPSMNSLGNVAEFPNTISGRRTHYLQAPMQTLSAVDLSTMQSF* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4531168 4532914 + Vvi18g419 Vvi18g419 780122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g419 323 PANTHER ZINC FINGER PROTEIN WIP2 1 267 IPR043584 GO:0003700|GO:0010468
Vvi18g419 323 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 1 267 - -
Vvi18g419 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Vvi18g419 323 SMART c2h2final6 116 138 IPR013087 -
Vvi18g419 323 SMART c2h2final6 200 220 IPR013087 -
Vvi18g419 323 SMART c2h2final6 163 195 IPR013087 -
Vvi18g419 323 Gene3D Classic Zinc Finger 115 138 - -
Vvi18g419 323 SUPERFAMILY beta-beta-alpha zinc fingers 111 138 IPR036236 -
Vvi18g419 323 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14328 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g419 - - vvi:100264302 572.007