Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g440 ATGGAGCGTTACGAGATTATTAAAGATATTGGATCTGGGAATTTCGGGGTTGCCAGGCTTGTTTCGGATAAGCGCACTAGAGAACTCTTTGCTGTTAAGTTTATTGAGAGAGGCCAGAAGATTGATGAACATGTGCAAAGGGAAATTATGAACCATAGATCATTGATGCATCCCAATATAGTTAGATTCAAGGAGGTCTTGCTGACACCAACTCATCTAGCGATAGTCATGGAGTATGCTGCAGGAGGAGAACTCTTTGGGAGGATATGCAATGCTGGTAGATTCAGTGAGGATGAGGCAAGATTTTTCTTCCAACAACTGATATCTGGAGTCAGTTACTGCCATTCAATGCGAATTTGTCATAGAGATCTTAAGCTGGAAAATACACTCTTAGATGGAAGTACAGCACCACGTGTCAAAATATGTGATTTTGGATACTCAAAGTCATCTGTGTTGCACTCTCAACCAAAATCTACTGTTGGAACACCAGCCTACATTGCACCTGAGGTCCTGTCTAGAAAAGAATATGATGGGAAGCTCTCAGATGTTTGGTCCTGTGGGGTCACTTTATATGTGATGCTGGTTGGGGCGTATCCCTTTGAAGATCCTGATGATCCCAGAAACTTCAGGAAGACAATTGGTAGAATACTTAGCGTCCACTACTCAATTCCAGATTACGTCAGAGTGTCCATTGAGTGTAGACATCTGCTATCTCGAGTTTTTGTGGCAAACCCAGATAAGAGAATAACAATCCCGGAAATTAAGACACATCCGTGGTTCTTAAAGAACTTGCCTATAGAAATGATGGATGGAGGAAGCTGGCAGAAAAATGATGTAAATAACCCATCCCAAAGTGTAGAAGAGATACTATCCATAATACAAGAGGCAAGGAAAACTACCGGAGTGCGCAAGGCGGGTGGGCCTTTTATGGAAGGCAGCATGGATCTTGATGACATTGACGCTGATGAAGATATAGAAACTAGTGGTGATTTTGTGTGTCCATTGTAA 1008 42.16 MERYEIIKDIGSGNFGVARLVSDKRTRELFAVKFIERGQKIDEHVQREIMNHRSLMHPNIVRFKEVLLTPTHLAIVMEYAAGGELFGRICNAGRFSEDEARFFFQQLISGVSYCHSMRICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRKEYDGKLSDVWSCGVTLYVMLVGAYPFEDPDDPRNFRKTIGRILSVHYSIPDYVRVSIECRHLLSRVFVANPDKRITIPEIKTHPWFLKNLPIEMMDGGSWQKNDVNNPSQSVEEILSIIQEARKTTGVRKAGGPFMEGSMDLDDIDADEDIETSGDFVCPL* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4733207 4737587 - Vvi18g440 Vvi18g440 780143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g440 335 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vvi18g440 335 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g440 335 PANTHER SERINE/THREONINE KINASE 2 327 - -
Vvi18g440 335 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g440 335 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi18g440 335 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 2 327 - -
Vvi18g440 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vvi18g440 335 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vvi18g440 335 CDD STKc_SnRK2 3 259 - -
Vvi18g440 335 SUPERFAMILY Protein kinase-like (PK-like) 1 266 IPR011009 -
Vvi18g440 335 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g440 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - vvi:100232851 675.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g865 Vvi18g440 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0520 . . . . Blo17g00113 Blo18g00128 . Bda13g01394 . Bpe14g00461 Bma01g01397 Bma02g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76373 PF00069 Pkinase 1.50E-70 CL0016 Vvi PK