Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g442 ATGGTGGAGTTCATGGAGAAGGTCTCGGCCGCCGTGGATTCCGAGGAACTCACTAAGGAGGAGAGCCGCGGCAACGAGGACCACATGAAGGGCGATTATCATCGCTATCTGGCCGAGTTTAAAACTGGAGCCGAGCGCAAGGAGGCGGCTGAGAGTACCCTCACTGCCTATAAATCTGCTCAGGATATTGCAAACGCAGAACTGGCTCCAACTCATCCAATCCGGCTCGGACTGGCTCTCAACTTCTCTGTGTTTTACTACGAGATTCTGAATTCTCCCGATCGAGCTTGTAACCTTGCGAAACAGGCATTTGATGAAGCCATTGCTGAATTGGATACCTTGGGTGAGGAGTCATACAAGGATAGCACTTTGATAATGCAACTTCTTCGTGACAATCTCACTCTGTGGACCTCAGATATGCAGGATGATGGGGCAGATGAGATTAAAGAAGCACCAAAGCGTGATGATGAACAGCAGTGA 480 49.79 MVEFMEKVSAAVDSEELTKEESRGNEDHMKGDYHRYLAEFKTGAERKEAAESTLTAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAPKRDDEQQ* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4742537 4745017 + Vvi18g442 Vvi18g442 780145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g442 159 PRINTS 14-3-3 protein zeta signature 21 43 IPR000308 -
Vvi18g442 159 PRINTS 14-3-3 protein zeta signature 56 82 IPR000308 -
Vvi18g442 159 PRINTS 14-3-3 protein zeta signature 83 109 IPR000308 -
Vvi18g442 159 PRINTS 14-3-3 protein zeta signature 110 139 IPR000308 -
Vvi18g442 159 PANTHER 14-3-3 PROTEIN 28 156 IPR000308 -
Vvi18g442 159 SMART 1433_4 1 150 IPR023410 -
Vvi18g442 159 PANTHER 14-3-3 PROTEIN 6 28 156 - -
Vvi18g442 159 Gene3D - 26 150 IPR036815 -
Vvi18g442 159 Pfam 14-3-3 protein 18 137 IPR023410 -
Vvi18g442 159 SUPERFAMILY 14-3-3 protein 19 146 IPR036815 -
Vvi18g442 159 ProSitePatterns 14-3-3 proteins signature 2. 119 138 IPR023409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g442 K06630 YWHAE; 14-3-3 protein epsilon - twl:120010991 273.478
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g442 . . Bda01g00893 Bda03g00486 . Bpe04g00439 . . Cmo05g00534 Cmo12g00129 Cma01g01616 Cma09g00568 Car01g01232 Car12g00154 Sed04g0158 Cpe06g00431 Cpe07g00142 Bhi04g00777 Tan02g2410 Cmetu03g2141 . Hepe10g0481 . Lcy13g1545 Cla08g01123 Cam08g1580 Cec08g1150 Cco08g1276 Clacu08g1281 . Cre08g1063 . . . . Lsi04g02246 Csa03g04457 Chy04g00245 Cme03g01852 Blo17g00112 Blo18g00127 . Bda13g01393 Bpe02g01128 Bpe14g00462 Bma01g01396 Bma02g00132 Sed05g1594 Cmo01g01661 Cmo09g00555 Cma12g00167 Cma05g00507 Car05g00457 Car09g00495 Cpe11g00447 Cpe02g00365 Bhi09g02451 Tan01g3801 Cmetu04g2791 . Hepe01g2137 Mch11g0676 . Cla11g01392 Cam11g1448 Cec11g1476 Cco11g1473 Clacu11g1607 Cmu11g1426 Cre11g1846 Lsi08g00980 Csa02g02163 Chy03g01354 Cme04g00274
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi19g118 ECH 2 234 14-3-3 family AT4G09000 73.2 2.9e-93 339.0
Vvi10g212 ECH 4 238 14-3-3 family AT4G09000 70.9 3.2e-92 335.5
Vvi18g412 ECH 4 235 14-3-3 family AT4G09000 72.2 4.2e-92 335.1
Vvi1g51 . 1 231 14-3-3 family AT4G09000 73.0 9.7e-89 323.9
Vvi7g888 ECH 1 157 14-3-3 family AT4G09000 62.0 3.7e-64 242.3
Vvi18g442 . 1 141 14-3-3 family AT4G09000 60.2 1.4e-58 223.8
Vvi18g485 . 14 151 14-3-3 family AT4G09000 65.3 9.2e-55 211.1
Vvi14g902 . 1 112 14-3-3 family AT4G09000 90.2 1.9e-52 203.4
Vvi19g118 ECH 3 237 14-3-3 family AT1G78300 73.8 4.3e-95 344.7
Vvi10g212 ECH 7 241 14-3-3 family AT1G78300 71.7 6.9e-93 337.4
Vvi18g412 ECH 4 244 14-3-3 family AT1G78300 69.5 2.2e-91 332.4
Vvi1g51 . 1 249 14-3-3 family AT1G78300 69.3 1.6e-89 326.2
Vvi7g888 ECH 1 173 14-3-3 family AT1G78300 64.0 2.6e-71 265.8
Vvi18g442 . 1 160 14-3-3 family AT1G78300 62.9 2.5e-66 249.2
Vvi14g902 . 1 124 14-3-3 family AT1G78300 90.3 2.5e-58 222.6
Vvi18g485 . 32 152 14-3-3 family AT1G78300 87.6 2.3e-56 216.1
Vvi18g412 ECH 1 248 14-3-3 family AT5G38480 72.4 1.3e-96 349.7
Vvi10g212 ECH 7 242 14-3-3 family AT5G38480 72.9 9.8e-92 333.6
Vvi19g118 ECH 3 238 14-3-3 family AT5G38480 73.1 1.3e-91 333.2
Vvi1g51 . 1 249 14-3-3 family AT5G38480 70.5 3.5e-89 325.1
Vvi7g888 ECH 1 171 14-3-3 family AT5G38480 63.0 5.8e-68 254.6
Vvi18g442 . 1 155 14-3-3 family AT5G38480 59.6 1.7e-59 226.5
Vvi14g902 . 1 130 14-3-3 family AT5G38480 86.2 4.6e-57 218.4
Vvi18g485 . 30 156 14-3-3 family AT5G38480 82.7 1.6e-54 209.9
Vvi19g118 ECH 2 233 14-3-3 family AT1G35160 74.4 1.6e-93 339.7
Vvi18g412 ECH 4 235 14-3-3 family AT1G35160 73.1 7.9e-93 337.4
Vvi10g212 ECH 2 237 14-3-3 family AT1G35160 71.4 3.0e-92 335.5
Vvi1g51 . 1 231 14-3-3 family AT1G35160 72.5 1.5e-88 323.2
Vvi7g888 ECH 1 157 14-3-3 family AT1G35160 62.0 2.6e-64 242.7
Vvi18g442 . 1 141 14-3-3 family AT1G35160 61.1 2.0e-59 226.5
Vvi18g485 . 32 151 14-3-3 family AT1G35160 86.7 2.9e-55 212.6
Vvi14g902 . 1 111 14-3-3 family AT1G35160 92.8 2.7e-53 206.1
Vvi18g412 ECH 4 244 14-3-3 family AT5G16050 67.5 1.0e-86 317.0
Vvi19g118 ECH 2 239 14-3-3 family AT5G16050 67.5 1.4e-85 313.2
Vvi10g212 ECH 1 242 14-3-3 family AT5G16050 65.6 2.1e-84 309.3
Vvi1g51 . 27 238 14-3-3 family AT5G16050 71.2 8.2e-81 297.4
Vvi7g888 ECH 37 169 14-3-3 family AT5G16050 89.5 3.5e-63 238.8
Vvi14g902 . 1 125 14-3-3 family AT5G16050 92.0 8.0e-60 227.6
Vvi18g442 . 29 153 14-3-3 family AT5G16050 90.4 3.0e-59 225.7
Vvi18g485 . 29 153 14-3-3 family AT5G16050 86.4 2.2e-57 219.5
Vvi10g212 ECH 1 238 14-3-3 family AT5G10450 67.2 3.2e-88 322.0
Vvi18g412 ECH 4 235 14-3-3 family AT5G10450 67.7 4.6e-87 318.2
Vvi19g118 ECH 1 251 14-3-3 family AT5G10450 63.4 1.0e-86 317.0
Vvi1g51 . 1 231 14-3-3 family AT5G10450 67.9 5.2e-83 304.7
Vvi7g888 ECH 1 170 14-3-3 family AT5G10450 55.6 3.7e-60 228.8
Vvi18g485 . 1 151 14-3-3 family AT5G10450 59.9 9.0e-59 224.2
Vvi18g442 . 29 150 14-3-3 family AT5G10450 81.1 4.8e-52 201.8
Vvi14g902 . 1 127 14-3-3 family AT5G10450 77.7 9.0e-51 197.6
Vvi18g412 ECH 4 240 14-3-3 family AT3G02520 73.6 4.4e-95 344.7
Vvi19g118 ECH 2 239 14-3-3 family AT3G02520 73.3 2.9e-94 342.0
Vvi10g212 ECH 4 238 14-3-3 family AT3G02520 73.0 1.2e-92 336.7
Vvi1g51 . 1 252 14-3-3 family AT3G02520 68.5 7.3e-90 327.4
Vvi7g888 ECH 1 173 14-3-3 family AT3G02520 62.2 6.5e-70 261.2
Vvi14g902 . 1 133 14-3-3 family AT3G02520 89.6 2.5e-61 232.6
Vvi18g442 . 1 158 14-3-3 family AT3G02520 58.5 5.5e-61 231.5
Vvi18g485 . 29 153 14-3-3 family AT3G02520 84.8 1.8e-56 216.5
Vvi10g212 ECH 1 238 14-3-3 family AT5G65430 68.0 8.0e-89 323.9
Vvi19g118 ECH 1 259 14-3-3 family AT5G65430 63.7 1.4e-88 323.2
Vvi18g412 ECH 4 235 14-3-3 family AT5G65430 69.4 3.0e-88 322.0
Vvi1g51 . 1 231 14-3-3 family AT5G65430 69.2 6.5e-83 304.3
Vvi18g485 . 1 151 14-3-3 family AT5G65430 60.4 1.0e-59 227.3
Vvi7g888 ECH 1 157 14-3-3 family AT5G65430 57.4 1.1e-58 223.8
Vvi18g442 . 18 141 14-3-3 family AT5G65430 80.6 1.3e-51 200.3
Vvi14g902 . 1 112 14-3-3 family AT5G65430 83.0 4.3e-50 195.3
Vvi10g212 ECH 1 264 14-3-3 family AT2G42590 78.2 1.4e-112 402.9
Vvi19g118 ECH 3 239 14-3-3 family AT2G42590 82.7 8.7e-110 393.7
Vvi18g412 ECH 2 241 14-3-3 family AT2G42590 79.6 4.0e-107 384.8
Vvi1g51 . 1 241 14-3-3 family AT2G42590 75.5 6.9e-99 357.5
Vvi7g888 ECH 16 163 14-3-3 family AT2G42590 65.6 1.4e-51 200.3
Vvi18g442 . 3 147 14-3-3 family AT2G42590 64.2 2.2e-49 193.0
Vvi14g902 . 1 119 14-3-3 family AT2G42590 79.0 1.5e-48 190.3
Vvi18g485 . 32 153 14-3-3 family AT2G42590 72.1 2.3e-46 183.0
Vvi18g412 ECH 3 240 14-3-3 family AT1G22300 84.0 1.0e-109 393.3
Vvi19g118 ECH 3 240 14-3-3 family AT1G22300 77.7 9.3e-103 370.2
Vvi10g212 ECH 11 238 14-3-3 family AT1G22300 78.9 5.7e-100 360.9
Vvi1g51 . 1 236 14-3-3 family AT1G22300 75.0 1.7e-96 349.4
Vvi7g888 ECH 1 161 14-3-3 family AT1G22300 51.1 6.4e-51 198.0
Vvi18g442 . 29 145 14-3-3 family AT1G22300 77.8 7.3e-47 184.5
Vvi14g902 . 1 117 14-3-3 family AT1G22300 75.2 1.5e-44 176.8
Vvi18g485 . 32 153 14-3-3 family AT1G22300 71.3 5.8e-44 174.9
Vvi18g412 ECH 3 253 14-3-3 family AT1G34760 83.7 4.2e-111 397.9
Vvi19g118 ECH 7 238 14-3-3 family AT1G34760 81.0 2.5e-103 372.1
Vvi10g212 ECH 11 245 14-3-3 family AT1G34760 78.7 1.0e-101 366.7
Vvi1g51 . 1 237 14-3-3 family AT1G34760 79.3 2.2e-99 359.0
Vvi7g888 ECH 1 172 14-3-3 family AT1G34760 50.8 3.2e-50 195.7
Vvi18g442 . 29 144 14-3-3 family AT1G34760 76.7 1.4e-45 180.3
Vvi14g902 . 1 114 14-3-3 family AT1G34760 75.4 6.4e-43 171.4
Vvi18g485 . 32 152 14-3-3 family AT1G34760 69.4 5.4e-42 168.3
Vvi1g51 . 1 246 14-3-3 family AT1G26480 86.6 6.2e-113 404.1
Vvi18g412 ECH 3 241 14-3-3 family AT1G26480 80.8 1.1e-106 383.3
Vvi19g118 ECH 3 239 14-3-3 family AT1G26480 81.4 2.5e-106 382.1
Vvi10g212 ECH 3 244 14-3-3 family AT1G26480 77.3 2.0e-103 372.5
Vvi7g888 ECH 1 165 14-3-3 family AT1G26480 53.8 9.5e-53 204.1
Vvi18g442 . 29 149 14-3-3 family AT1G26480 78.7 7.8e-47 184.5
Vvi14g902 . 1 127 14-3-3 family AT1G26480 76.0 8.6e-46 181.0
Vvi18g485 . 34 149 14-3-3 family AT1G26480 74.1 5.2e-43 171.8
Vvi18g412 ECH 3 233 14-3-3 family AT1G78220 52.6 2.6e-65 245.7
Vvi19g118 ECH 3 232 14-3-3 family AT1G78220 51.5 1.1e-63 240.4
Vvi10g212 ECH 6 236 14-3-3 family AT1G78220 51.3 1.4e-63 240.0
Vvi1g51 . 1 229 14-3-3 family AT1G78220 50.4 2.8e-59 225.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015395 1 3 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 11