Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g449 ATGAAGCGCTTCAGTAGCTCTGTTTCTTTGGCTCCTTTGGTCTCCATGTGTTCGCCTAAAGAGGGGAAGAACTCAAAGAATTATCCTGTCTACGATAGTGAATTCCAAGCTATGTTAGATAGTTTTGATGAAGAAGACTGTGCTGAGGAAACTGGACTGATCACTGAGAAGAAAAAGCGATTGAGCTTTGATCAGGTAAAGGCCTTGGAGAGAAGTTTTGAGATTGAGAACAAGCTTGAGCCAGAGCGAAAGGTGAAAATAGCAGAAGAACTGGGCCTAAAACCACGACAAGTAGCGATATGGTTTCAAAACCGCCGAGCACGCTGGAAGACGAAGCAATTGGAGAGAGACTACGGTATTCTTAAAGCCAATTATGATGCTCTGAAGCTTGACTACGAGAGTCTCGAACAAGAGAAAGAAGCTTTAGTCGCAGAGCTAAGAGAGCTGAAAGCAAAGCTCCAAGGCGGAAACATGGAGTTAAATCAATCTGTTAAAGAGGAGGCTCTAGTTTCGGAGTCTGAGAATAATGTTTCAGAGCAGGGTAAGAACAATGGAAATATATCAGGAATCCATGGATTGGGAGACTTCAAAGACGGGTCATCTGATACGTCTTCTTCTTCTCTTAGATTGAACTGTGCTTCTTTGTCATCACCTTCACCAATGAACTGGTTCCCAAGTAAAGCGTTTCAGCATCAGTTTGGGAGAATGGAAGAGCAGAGTTTCTTCAGTGCAGAGGAGCCCTGCAATTTCTTCTGGGGTGATCAAGCCCCCTCTCTTCATTGGTACTTTCCTGATCATGGCCATAACCTTTTTGGCCTTTTTCGGAGATTAAATGCTTCCCTTTATCCACTCCAGGGGAATGTAGGGCTAATTTCACTGATACACTCTCATCCAATAATTATAATCCTGACCATTAAGCCATCTCCTTTGACGGAGTAA 939 43.45 MKRFSSSVSLAPLVSMCSPKEGKNSKNYPVYDSEFQAMLDSFDEEDCAEETGLITEKKKRLSFDQVKALERSFEIENKLEPERKVKIAEELGLKPRQVAIWFQNRRARWKTKQLERDYGILKANYDALKLDYESLEQEKEALVAELRELKAKLQGGNMELNQSVKEEALVSESENNVSEQGKNNGNISGIHGLGDFKDGSSDTSSSSLRLNCASLSSPSPMNWFPSKAFQHQFGRMEEQSFFSAEEPCNFFWGDQAPSLHWYFPDHGHNLFGLFRRLNASLYPLQGNVGLISLIHSHPIIIILTIKPSPLTE* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4806871 4808947 - Vvi18g449 Vvi18g449 780152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g449 312 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vvi18g449 312 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Vvi18g449 312 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Vvi18g449 312 SMART HOX_1 55 116 IPR001356 GO:0003677
Vvi18g449 312 MobiDBLite consensus disorder prediction 171 194 - -
Vvi18g449 312 SUPERFAMILY Homeodomain-like 46 114 IPR009057 -
Vvi18g449 312 MobiDBLite consensus disorder prediction 171 187 - -
Vvi18g449 312 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vvi18g449 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 200 256 - -
Vvi18g449 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 185 - -
Vvi18g449 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 200 256 IPR045224 GO:0003700
Vvi18g449 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 185 IPR045224 GO:0003700
Vvi18g449 312 Pfam Homeobox associated leucine zipper 112 154 IPR003106 GO:0006355|GO:0043565
Vvi18g449 312 Coils Coil 118 159 - -
Vvi18g449 312 CDD homeodomain 57 113 IPR001356 GO:0003677
Vvi18g449 312 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vvi18g449 312 Gene3D - 54 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g449 K09338 HD-ZIP; homeobox-leucine zipper protein - vvi:100255823 503.827
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g779 Vvi18g449 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001406 3 3 3 4 3 2 4 2 2 1 2 2 4 1 2 4 2 2 4 2 1 2 2 2 2 2 2 3 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14330 PF00046 Homeodomain 9.60E-16 CL0123 Vvi TF