Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g45 ATGGCGGCACAGTCGCCGATCAAAGACCCTATCGGAGCATCCACTGAAACCCTAACCCAACAACCTGATTCCTCTTCCTCCATCATTCCAACCGTCAAGTCTGAGATTCCGGTCGCCGCCTCCGCTTCCCCTTCAGTTGGGATTGTTCCCCGTGCTTCTGAACCGGAGACCATCAACATCCCCAGCTATTCCAGGTGGTTTTCGTGGAACAATGTCCACGAATGCGAGGTTCGGTTCCTTCCTGAGTTCTTCGACGCTCGGTCCCCGTCCAAGAACCCTAGGGTTTACAAGTATTACCGTAATTCGATAATCCTGTCCTTCAGACAAAACCCTTCGAGGAAGCTCACGTTTACGGATGTTCGGAAAATTCTTGTTGGAGATGTGGGATCCATTCGCAGGGTTTTTGATTTTCTGGAGGCTTGGGGTTTGATTAATTACTCCGGTTCTGCCTTGAAACAGCCGTTGAAATGGGAAGAGAAGGATAACAAGTCCGGTGGGGCGTCTTCGCATACCGGGGATGCTGGAGGAGGTGCTGTTGAATCTATTCCTAAGAGGAGATGGTGCAGCGGCTGCAAATCCCTCTGCAGCATTGCTTGTTTTGCCTGTGATAAGTTTGACTTGACTCTCTGTGCACGGTGCTATGTTCGTGGCAATTATCGGGTTGGGGTCAATTCTTCAGATTTTAGGCGAGTTGAAATCAGTGAAGACACAAAAGCAGGTTGGACTGACAAAGAAACTTTGCACCTTTTAGAAGCTGTCTTGCATTATGGTGATGACTGGAAGAAGGTTGCGGAGCATGTTGGTGGTAGAAATGAGAAAGAATGTGTTACTCATTTTATCAAGCTTTCTTTTGGGGAGCAATATCTTGGACATACAAGCTCTGGGGATGTTGATAACAAGTTTTCTCAAGCGAAGGACCAGAGTGATGCTGGATTTGGACAGGAAAATATTGGCACTTCTTCCGCAAGTAAAAAAATGCGACTCACGCCACTTTCTGATGCAAGCAACCCAATTATGGCTCAGGCTGCATTCTTGTCGGCTTTGGTGGGTGTAGAGGTTGCAGAAGCTGCTGCTCGAGCAGCTGTTGCATCTTTGTCAGATGTGGATCCTAGAAAAATGAAAGAGGGTCTTGGATCTTTTGCTAATGGTGCAAGAATACAAGACCCTAATGTGGAATCCAATGGCAACACCACCTCAAATGTGTTGGAAGGAGCTTATGTAGATGCAAAGTCACTGCTCGAGAGGGAAGAGCTGGATGTGGAGAGAGCAATTTCTGGCATTACTGAAGTGCAGATGAAGGAGATTCGGGATAAGATTGTTCATTTTGAGGAGTTTGAATTGCATATGGAGAAAGAGTGGCAACAGCTCCAACAAATGAAGAACCTACTCTTTGTTGATCAGCTCACCCTTCTGTTTCAAAAAGCTGCTGCACCAAAAACTGGAGAATTGATGGGGGGCGAGAATGTTAGAACAGATTGA 1479 46.79 MAAQSPIKDPIGASTETLTQQPDSSSSIIPTVKSEIPVAASASPSVGIVPRASEPETINIPSYSRWFSWNNVHECEVRFLPEFFDARSPSKNPRVYKYYRNSIILSFRQNPSRKLTFTDVRKILVGDVGSIRRVFDFLEAWGLINYSGSALKQPLKWEEKDNKSGGASSHTGDAGGGAVESIPKRRWCSGCKSLCSIACFACDKFDLTLCARCYVRGNYRVGVNSSDFRRVEISEDTKAGWTDKETLHLLEAVLHYGDDWKKVAEHVGGRNEKECVTHFIKLSFGEQYLGHTSSGDVDNKFSQAKDQSDAGFGQENIGTSSASKKMRLTPLSDASNPIMAQAAFLSALVGVEVAEAAARAAVASLSDVDPRKMKEGLGSFANGARIQDPNVESNGNTTSNVLEGAYVDAKSLLEREELDVERAISGITEVQMKEIRDKIVHFEEFELHMEKEWQQLQQMKNLLFVDQLTLLFQKAAAPKTGELMGGENVRTD* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 531975 535425 + Vvi18g45 Vvi18g45 779748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g45 492 Gene3D - 64 149 IPR036388 -
Vvi18g45 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 286 IPR017930 -
Vvi18g45 492 Pfam SWIRM domain 61 146 IPR007526 GO:0005515
Vvi18g45 492 SMART sant 237 285 IPR001005 -
Vvi18g45 492 MobiDBLite consensus disorder prediction 10 28 - -
Vvi18g45 492 MobiDBLite consensus disorder prediction 160 179 - -
Vvi18g45 492 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g45 492 Pfam Myb-like DNA-binding domain 241 281 IPR001005 -
Vvi18g45 492 ProSiteProfiles Myb-like domain profile. 233 283 IPR001005 -
Vvi18g45 492 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 3 489 - -
Vvi18g45 492 PANTHER SWI/SNF COMPLEX-RELATED 3 489 - -
Vvi18g45 492 SUPERFAMILY Homeodomain-like 238 293 IPR009057 -
Vvi18g45 492 Pfam SWIRM-associated region 1 407 476 IPR032451 -
Vvi18g45 492 ProSiteProfiles SWIRM domain profile. 58 155 IPR007526 GO:0005515
Vvi18g45 492 ProSiteProfiles SANT domain profile. 236 287 IPR017884 -
Vvi18g45 492 SUPERFAMILY Homeodomain-like 54 159 IPR009057 -
Vvi18g45 492 Gene3D - 237 285 - -
Vvi18g45 492 CDD SANT 241 282 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g45 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - vvi:100258194 972.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1479 . . . . . . Blo18g00731 . Bda01g01574 Bpe02g01767 . Bma01g00692 . . . . . . . Car09g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28