Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g458 ATGATAAAAACATATTTGATTTTTAACAAATCTCTCTCTGTGCTTTCTTCTCTCCATGGTTCTTTAATGGCGATGAAGCATAGAAAGCTCTTCCCGACGCAAACCGCAACGAATCAGAGTGTGGACTGTCTAGATTTCTGTGACTCGACATGTCCTTACAACTGCTACATTTATCCAGACTCCTTGATTCCCCCCCCACCACCAGCATCCCCACGTCCACCAACTCTCTCCACCCTTGATCAGAATGATTCCCCCAACATCTCACCCTACGTGATCATCACAGTTGCCTTACTAGCGGGCTTCTTCCTTCTAGTCTGTTTCAACGCCATCATAGTCAAGTACTGTTGTGGTTGGAGAAGAAGAAATCGCTCTCCACCATCTGAATCAGACGGCAGAGACGAAGAGTTTCTTGATGAGAATCGAGGCCCGGCAATCGACCATCCCATCTGGTTTATCACCACCGCTGGTCTGCAACAAGCGATCATTAATTCAATTACCGTCTGCAAGTATAAAAGAGGTGAGGGCTTGATTGAAGGGACCGAGTGTTCGGTTTGTCTGAGTGAATTTCAGGAAGATGAAACTCTTCGGTTGCTACCCAAGTGTAACCATGCTTTTCACATCCCTTGTATAGATACATGGTTGAGCTCACACACCAATTGTCCCTTATGTCGTGCACGTATTATCTCTGACATTGTCAACCCTCCTCTGGAATCAAATGATCAAAATTCTCGTAGTTTGGGTCCAAATGAACAGACCCAGATGGAGAATTCTAGTAACGATACTGAATTGGATAACAATCTGATGAATCCAAAGGGAATTGGGTTGATGAGACTATGGATGGGCGAAAATTTGATTCAGGTAGCGTTCCAAAGAGGGATGTTGCATATACAAGCACCTTCAGACAGATGGGGAGTCCTTCCATTGCGCAGTGTTTGCATAAAGGCCCTATTTCAATGA 957 44.72 MIKTYLIFNKSLSVLSSLHGSLMAMKHRKLFPTQTATNQSVDCLDFCDSTCPYNCYIYPDSLIPPPPPASPRPPTLSTLDQNDSPNISPYVIITVALLAGFFLLVCFNAIIVKYCCGWRRRNRSPPSESDGRDEEFLDENRGPAIDHPIWFITTAGLQQAIINSITVCKYKRGEGLIEGTECSVCLSEFQEDETLRLLPKCNHAFHIPCIDTWLSSHTNCPLCRARIISDIVNPPLESNDQNSRSLGPNEQTQMENSSNDTELDNNLMNPKGIGLMRLWMGENLIQVAFQRGMLHIQAPSDRWGVLPLRSVCIKALFQ* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5000080 5001793 + Vvi18g458 Vvi18g458 780161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g458 318 Pfam Ring finger domain 181 224 IPR001841 -
Vvi18g458 318 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 24 268 - -
Vvi18g458 318 ProSiteProfiles Zinc finger RING-type profile. 182 224 IPR001841 -
Vvi18g458 318 MobiDBLite consensus disorder prediction 234 266 - -
Vvi18g458 318 CDD RING-H2_PA-TM-RING 181 224 - -
Vvi18g458 318 SMART ring_2 182 223 IPR001841 -
Vvi18g458 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 230 IPR013083 -
Vvi18g458 318 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 268 IPR044675 -
Vvi18g458 318 SUPERFAMILY RING/U-box 175 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g458 - - - vvi:100854240 508.834
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g981 Vvi18g458 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29