Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g459 ATGGCCTTAGAAGCTGTAGTTTTCCCAACATTAGATCCATTCAGTTATGGCTGCAAGGGAGGCGGATGGAGCTATGACTTTGATCTACAAGAAGAAGATAAAGCTCTTCTTGGGATTCTCGGCAATAACACAGAGCCAGGCTCCCATGGAAATTGGGACTCCTCATCTCCTTCGGTGATGCAAAATGCGATGGAGTGGGATCATAATTCTTCGCCCGAGGCATGCACAGGCGATCAATCTCTTGCCGGCGTGTTCCCTCCGACTGAAGAGCCTCCATCCACTTCCACAACAGGTCGGCGCAAGAGACGACGCACCAAAAGCTGCAAGAACAAAGAAGAAGTGGAGAATCAAAGGATGACCCACATTGCAGTGGAGCGCAACCGCCGGAAACAGATGAATGAGTATCTCGCCGTGCTCCGATCTTTGATGCCGCCTTCTTACACTCAAAGGGGAGATCAAGCATCAATCATTGGAGGCGCCATTAATTTCGTGAAGGAGCTGGAGCAGCTACTGCAGTCCCTGGAGGCCGAGAAGAGCAGTAAGCAACAAACCAACAATTCGGTCTCTTCCCCCTTTTCCAATTTCTTCACGTTCCCGCAGTACTCAACTCGTGCAACACACTGCACCAAAGACTCTATGATGGGTGACAACCGGTGGGCTGTGGCCGACATAGAAGTCACCATGGTGGAGAGCCACGCCAATATAAAGATACTTTCTAAAAGAAAAACTAAACAGCTCTTGAAGATAGTGGCCGGGTTTCAGAGTCTTAGCCTCACCATTCTCCACCTTAATGTTACTACATTTGATCAAATGGTGCTATATTCACTCAGTGTGAAGGTTGAGGAGGAGTGCCAGCTGACTACAGTCGATGAAATCGCGGCAGCCGTTAATCAGATGCTAAGAAGAATTCAAGAAGCTGCTGCTTTGAATTGA 933 48.55 MALEAVVFPTLDPFSYGCKGGGWSYDFDLQEEDKALLGILGNNTEPGSHGNWDSSSPSVMQNAMEWDHNSSPEACTGDQSLAGVFPPTEEPPSTSTTGRRKRRRTKSCKNKEEVENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYTQRGDQASIIGGAINFVKELEQLLQSLEAEKSSKQQTNNSVSSPFSNFFTFPQYSTRATHCTKDSMMGDNRWAVADIEVTMVESHANIKILSKRKTKQLLKIVAGFQSLSLTILHLNVTTFDQMVLYSLSVKVEEECQLTTVDEIAAAVNQMLRRIQEAAALN* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5009691 5011145 - Vvi18g459 Vvi18g459 780162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g459 310 Gene3D - 107 185 IPR036638 GO:0046983
Vvi18g459 310 PANTHER MAX DIMERIZATION, MAD 1 310 - -
Vvi18g459 310 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983
Vvi18g459 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 188 IPR036638 GO:0046983
Vvi18g459 310 Coils Coil 164 187 - -
Vvi18g459 310 MobiDBLite consensus disorder prediction 67 116 - -
Vvi18g459 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983
Vvi18g459 310 CDD bHLH_AtFAMA_like 119 191 - -
Vvi18g459 310 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 310 - -
Vvi18g459 310 SMART finulus 122 173 IPR011598 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14331 PF00010 HLH 3.30E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g459 - - vvi:100259155 576.244