Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g460 ATGTTTCCAATTTTCAATTTCAATGGCGTCGCTTGCCTGCTCAACATCTCTCTTCTGCTGCCCCTGTTATCCTGCGCAACCGCTCAGACCGCCGCAGAGCAGTCTCCCCCGCCCTCCGAACTCATGTCGTTAGCGCAGAAGTTCAACCCCTCCATGGCTATTGTAATGATCGCCATCGTAAGCGCCTTCTTCTTTATGGGGTTTTTCTCAGTTTACCTCCGCCAGTGTATCGAACGCCGCGTCCGCGGACGATTCAACACGGAAATCGTTGGAATTGGCGGACATCGCTCGTGGATGGCGGCTCGTGGTCTGAACAGCTCGGATATCGAGAGGTTTCCCACTTTCGTATACTCGGCGGTAAAGGCGCACAAGATAGGGAAAGAGGGGCTGGAATGCGCGGTGTGCCTAAACGAGTTCGAAGACGATGAAACGCTGCGTTTGCTCCCCAAGTGCAATCACGTGTTTCACTCCGACTGTATCGATCTTTGGTTGGCCTCTCACGTCACTTGTCCTGTTTGTCGTGCCAACCTTACTCCCAAACCAGGTGAAAAATTCTGCGCTCCCGTACCCATTTTTGGGCCGGAAACTGAATCCGATGAATCGGACACCAGAGTAGAGATCGTTGAGACGCCAAACCAAAATCGCGAGAGGTTTACGCTCAGATTACCGGAGGAGATAAGAAATCAGATCATGAATACGAGTTTAAGTCGTACAAAGAGTTGGGTAGCATTGCCGGGTGTGCAGAGCTCGAAAAGGGGATACAGGGCCAATAGTGTGGGAAGTCTTCGGGGAAAGACCTATTTTAACTACGAGCAATTCAACGGGGAGGTCAGGGCGGAACGGTTGGGTTTTTCCATGACGCCACCTTTCGTCCCAAGGACAGGTTCCTCCCACGCCCGCTCGCCCCAGGGCTGCGAGGGATCTTTGACTCCTAAGACTCTCTTCAGGTCCCTAAAATCCCCCTTCGATCGTCTTTTTCTTCCGGGAGGCAGCGTTGGTGAACGCCTATCTGATAGACCCCGCTCCGATAGTCCCGTTTAG 1041 52.83 MFPIFNFNGVACLLNISLLLPLLSCATAQTAAEQSPPPSELMSLAQKFNPSMAIVMIAIVSAFFFMGFFSVYLRQCIERRVRGRFNTEIVGIGGHRSWMAARGLNSSDIERFPTFVYSAVKAHKIGKEGLECAVCLNEFEDDETLRLLPKCNHVFHSDCIDLWLASHVTCPVCRANLTPKPGEKFCAPVPIFGPETESDESDTRVEIVETPNQNRERFTLRLPEEIRNQIMNTSLSRTKSWVALPGVQSSKRGYRANSVGSLRGKTYFNYEQFNGEVRAERLGFSMTPPFVPRTGSSHARSPQGCEGSLTPKTLFRSLKSPFDRLFLPGGSVGERLSDRPRSDSPV* 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5020554 5021751 + Vvi18g460 Vvi18g460 780163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g460 346 PANTHER RING-H2 FINGER PROTEIN ATL11 210 249 - -
Vvi18g460 346 PANTHER RING-H2 FINGER PROTEIN ATL11 11 187 - -
Vvi18g460 346 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Vvi18g460 346 CDD RING-H2_EL5_like 131 174 - -
Vvi18g460 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 180 IPR013083 -
Vvi18g460 346 SUPERFAMILY RING/U-box 124 181 - -
Vvi18g460 346 Pfam Ring finger domain 131 174 IPR001841 -
Vvi18g460 346 SMART ring_2 132 173 IPR001841 -
Vvi18g460 346 PANTHER RING FINGER DOMAIN-CONTAINING 210 249 - -
Vvi18g460 346 PANTHER RING FINGER DOMAIN-CONTAINING 11 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g460 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - vvi:100259131 670.233
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59