Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g466 ATGGCTTCCCCATCCTTGTTGTCCTTATTCTTCATATTTTCGCTTCTACTGGGGATGGCACATGCACATTATCTATCCCCCAACTTCTATGCAAGATCATGCCCTAGGGCTCTCCCTACCATTCGAACTGCAGTAAACAAAGCAGTGGCCAAAGAGAAACGCATGGGGGCCTCATTGCTCCGCCTCCATTTCCATGATTGCTTCGGATGTGATGCTTCTATATTATTGGATGACACTGCAACCTTTACTGGAGAGAAGACAGCAGGACCAAATAACAACTCTGTGAGAGGATATGAGGTGATCGACACCATTAAATCTCAAGTGGAAAGTTTGTGCCCTGGAGTTGTCTCTTGTGCAGATATTGTAGCAGTGGCAGCTCGTGACTCGGTTGTCGCTTTGGGTGGCCCAACATGGACTGTGCGATTAGGCAGAAGAGATTCAACCACGGCGAGTTTCAGTGCTGCTCGCACCGACCTCCCTGGCCCGAACTTAAATCTCAGTCAGCTTATATCTGCCTTCTCCAAGAAGGGCTTGACTACTAAGGAAATGGTGGTTCTCTCAGGAACTCATACCATAGGTAAAGCAAGATGCACAAGTTTTCGAAATCATATTTACAACGACACCGACATCGATCCAGCATTTGCAGCATCAAAACAGAAAATCTGCCCAAGATCGGGTGGAGATGATAATCTATCTCCTCTGGATGGAACTACTACTGTTTTCGATAATGTTTATTTTAGGGGTTTGAAGGAAAAGAAGGGTCTGTTGCACTCAGACCAGGAACTCTACAACGGTGGCTCCACAGATTCCATAGTTGAAACCTACAGCATCAACACTGCCACTTTCTTCAGGGATGTGGCCAACGCCATGGTTAAGATGGGAAATATTAGTCCTTTAACCGGAACTAATGGACAGATTAGGACCAACTGCAGGAAAATTCAATGCATAGGACCAACCCCCATAGAAATAAGAAACCCCACAAATTTAACCAAGAGCCTTTCAATCATTGGCACTATCCCCTTGCAAGCATCGAGTTCCAAGAAAATCCATCAAATAAAAAAAATCATTTTTTCAAAAACTATATATCCAAATAAAAACCTTGAAATTCAAATATATAATATCATAAATATAAACACCAAGCGTGGGTCAGGCTTGCACCACTTGCAACTCCAATCAACCCAATCAAACAAAACAGCCAACCCACTCCTTACCCTACCACATTTTGCTACAATATTTTCTCTCTATATAAAACACGATAACGACACCACAATAAAAAACCCTAATTACAAAAGACGGTTCCACAATGAGTTAAATGGACCCAAAAATCATATTTGGCTATAA 1341 42.65 MASPSLLSLFFIFSLLLGMAHAHYLSPNFYARSCPRALPTIRTAVNKAVAKEKRMGASLLRLHFHDCFGCDASILLDDTATFTGEKTAGPNNNSVRGYEVIDTIKSQVESLCPGVVSCADIVAVAARDSVVALGGPTWTVRLGRRDSTTASFSAARTDLPGPNLNLSQLISAFSKKGLTTKEMVVLSGTHTIGKARCTSFRNHIYNDTDIDPAFAASKQKICPRSGGDDNLSPLDGTTTVFDNVYFRGLKEKKGLLHSDQELYNGGSTDSIVETYSINTATFFRDVANAMVKMGNISPLTGTNGQIRTNCRKIQCIGPTPIEIRNPTNLTKSLSIIGTIPLQASSSKKIHQIKKIIFSKTIYPNKNLEIQIYNIININTKRGSGLHHLQLQSTQSNKTANPLLTLPHFATIFSLYIKHDNDTTIKNPNYKRRFHNELNGPKNHIWL* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5092139 5102291 + Vvi18g466 Vvi18g466 780169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g466 446 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Vvi18g466 446 Gene3D Peroxidase, domain 2 160 293 - -
Vvi18g466 446 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PANTHER PEROXIDASE 72-RELATED 18 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 CDD secretory_peroxidase 25 313 IPR033905 GO:0004601|GO:0042744
Vvi18g466 446 PANTHER PEROXIDASE 18 314 - -
Vvi18g466 446 ProSiteProfiles Plant heme peroxidase family profile. 24 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 Pfam Peroxidase 42 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 Gene3D - 28 311 - -
Vvi18g466 446 SUPERFAMILY Heme-dependent peroxidases 25 312 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Vvi18g466 446 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Plant peroxidase signature 232 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Plant peroxidase signature 248 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g466 446 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g466 K00430 - vvi:100232945 610.527