Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g468 ATGGCTTCCCTCTCCTTGTTTTCCTTATTCTGTATGTTTTCGTTTCTATTGGGGATGGCACATGCACAGCTATCTTCCGACTACTACTCAAGTTCATGCCCTAGCGCTCTGTCTACCATTCAAACTGCAGTAAACAATGCAGTGGCTGACGAGTCCCGCATGGGGGCCTCACTGCTCCGCCTTCATTTCCATGATTGCTTTGGATGTGATGCTTCTATATTATTGGATGACACTGCAAACTTTACTGGAGAGAAGACAGCAGGACCAAATAATAACTCTGTGAGAGGATATGATGTGATCGACACCATTAAATCTCAAATGGAAAGCTTGTGCCCTGGAGTTGTTTCTTGTGCAGATATTGTAGCTGTGGCAGCTCGTGACTCTGTTGTTGCTTTGGGTGGCCCAACATGGACTGTGCAATTGGGCAGAAGAGATTCAACCACGGCGAGTTTTAGTACTGCTAACTCTGACCTCCCTGCTCCGACCTCAGATCTTGATGCTCTTATATCTCTCTTCTCCAACAAGGGCTTCACTACCCAGGAAATGGTGGTTCTCTCAGGAACTCATACCATAGGCAAAGCACAATGCTCAAAATTTCGGGATCGAATTTACAACGAGACCAACATCGATGCAACATTTGCAACATCAAAACAGGCAATCTGCCCAAATCAGGACAAACTGCAGGGCAATAAACGGATAAATTTAAATGTCTTTAAAGTTGTACTTCAGTTAATATCTGGGAGTAGCTTATCACAAAGTGATTTGAGATATATATCTTGTTTATGGCATTTGTATTTTGCTCATCAACTTAAAGGTTCATCTCAAATAAAGTTTTTATTTGAATTTTTGAAGCATCAAATCCAGACTTTTCTACGCACTTTAACTAAGCCTATTAAAAGTGTTCTCCCTGGCCCCACCTTAAACCTCAGTCAGCTTGTATCTGCCTTCTCCAATAAGGGCTTCACTACCAAGGAAACGGTGGTTCTCTCAGGTGTTTCATTTCCGTTGTCAAATGGGCCCTCTATGTGTATTTCACCAATATCCTTGACTGTTGATACTATCCTTCTTTTTTTCCGAACTAAAGGCATCACCGTTATTCGAATAGAATCGGGTGGAGATGATAATCTATCTCCTCTAGATAAAACTACTACTGTTTTTTATTATGCTTATTTCAGGGATTTGAAGGAAAAGAAGGGTCTGTTGCACTCAGACCAGCAACTCTACAATGATGGCTCCACAGATTCCATAGTCGAAAGCTACAGCATCAACTCTGCCACTTTCTTTAGGGATGTGACCAACGCCATGGTTTTAGATGGGAAATCTTAG 1326 42.01 MASLSLFSLFCMFSFLLGMAHAQLSSDYYSSSCPSALSTIQTAVNNAVADESRMGASLLRLHFHDCFGCDASILLDDTANFTGEKTAGPNNNSVRGYDVIDTIKSQMESLCPGVVSCADIVAVAARDSVVALGGPTWTVQLGRRDSTTASFSTANSDLPAPTSDLDALISLFSNKGFTTQEMVVLSGTHTIGKAQCSKFRDRIYNETNIDATFATSKQAICPNQDKLQGNKRINLNVFKVVLQLISGSSLSQSDLRYISCLWHLYFAHQLKGSSQIKFLFEFLKHQIQTFLRTLTKPIKSVLPGPTLNLSQLVSAFSNKGFTTKETVVLSGVSFPLSNGPSMCISPISLTVDTILLFFRTKGITVIRIESGGDDNLSPLDKTTTVFYYAYFRDLKEKKGLLHSDQQLYNDGSTDSIVESYSINSATFFRDVTNAMVLDGKS* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5107100 5110250 + Vvi18g468 Vvi18g468 780171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g468 441 Pfam Peroxidase 300 421 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 Pfam Peroxidase 41 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 Gene3D - 24 163 - -
Vvi18g468 441 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Haem peroxidase superfamily signature 379 394 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PANTHER PEROXIDASE 72-RELATED 16 226 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PANTHER PEROXIDASE 72-RELATED 299 437 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 PRINTS Plant peroxidase signature 243 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Vvi18g468 441 Gene3D Peroxidase, domain 2 164 261 - -
Vvi18g468 441 Gene3D Peroxidase, domain 2 303 437 - -
Vvi18g468 441 SUPERFAMILY Heme-dependent peroxidases 23 259 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 CDD secretory_peroxidase 23 436 IPR033905 GO:0004601|GO:0042744
Vvi18g468 441 PANTHER PEROXIDASE 299 437 - -
Vvi18g468 441 PANTHER PEROXIDASE 16 226 - -
Vvi18g468 441 SUPERFAMILY Heme-dependent peroxidases 297 436 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi18g468 441 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Vvi18g468 441 ProSiteProfiles Plant heme peroxidase family profile. 23 441 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g468 K00430 - vvi:109121407 423.705