Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g469 ATGGGGGCCTCATTGCTCCGCCTTCATTTCCATGATTGTTTTGTATTGGGATGTGATGCTTCTATATTATTGGATGACACTGCAAACTTTACTGGAGAGAAGACAGCAGGACCAAATAATAACTCTTTGAGAGGATATGATGTGATCGACACCATTAAATCTCAAATGGAAAGCTTGTGCCCTGGAGTTGTTTCTTGTGCAGATATTGTAGCTGTGGCAGCTCGTGACTCTGTTGTTGCTTTGGGTGGCCCAACATGGACTGTGCAAATGGGCAGAAGAGATTCAACCACGGCGAGCTTAAGTACTGCTAACGCTGACCTCCCTGCCCCGACCTCAGATCTTGATGTTCTTACATCTCTCTTCTCCAACAAGGGCTTCACTACCCAGGAAATGGTGGCTCTCTCAGGAACTCATACCATAGGTAAAGCACAATGCATAAAATTTCGGTATCGAATTTACAACGAGACCAACGTCGATGCTGCATTTGCAAAATCAAAACAGAAAATCTGCCCATGGACAGGCGGGGATGAGAATCTGTCTGATCTGGATGAAACGACTACTGTTTTCGATACTGTTTATTTCAAGGATTTGATAGAGAAGAAGGGTCTGTTGCACTCAGACCAACAACTTTACAATGGTAACTCCACAGATTCCATGGTCGAAACCTACAGCACCGACTCTACCACTTTCTTTACCGATGTGGCCAACGCCATGGTTAAAATGGGAAACTTGATTTTTAGTTGGTTTTGGATCTACTACAAAAATTAA 768 43.62 MGASLLRLHFHDCFVLGCDASILLDDTANFTGEKTAGPNNNSLRGYDVIDTIKSQMESLCPGVVSCADIVAVAARDSVVALGGPTWTVQMGRRDSTTASLSTANADLPAPTSDLDVLTSLFSNKGFTTQEMVALSGTHTIGKAQCIKFRYRIYNETNVDAAFAKSKQKICPWTGGDENLSDLDETTTVFDTVYFKDLIEKKGLLHSDQQLYNGNSTDSMVETYSTDSTTFFTDVANAMVKMGNLIFSWFWIYYKN* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5121694 5123760 + Vvi18g469 Vvi18g469 780172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g469 255 CDD secretory_peroxidase 1 244 IPR033905 GO:0004601|GO:0042744
Vvi18g469 255 SUPERFAMILY Heme-dependent peroxidases 1 244 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PANTHER PEROXIDASE 1 244 - -
Vvi18g469 255 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Plant peroxidase signature 180 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Plant peroxidase signature 196 213 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Plant peroxidase signature 236 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 Gene3D - 1 244 - -
Vvi18g469 255 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601
Vvi18g469 255 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Vvi18g469 255 Gene3D Peroxidase, domain 2 108 241 - -
Vvi18g469 255 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 Pfam Peroxidase 1 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 ProSiteProfiles Plant heme peroxidase family profile. 1 244 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g469 255 PANTHER PEROXIDASE 72-RELATED 1 244 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g469 K00430 - vvi:100267701 475.322