Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g47 ATGTCAGGATCTGAAACTGGAATCATGACTACCAGAGAGCCCTTCAGCATGGGTCTCCAGAAAAATGCGGTACCGTCACAGCCGGTGATACAAAACATGCGCTTAGCCTTCAGTCCAGACGGAGCAGCTGTGTACAAGCCCGTTTCCGGGACCTCCCCGCCGTACCAGTCTTCCGGCGGTACCGGTGGAGATGGTTCCACCGGCGGCGCCATCATACCTCACGGCCTTAACATGAATATGGGGAGTGAGCCCTTGAAGAGGAAGAGAGGGAGGCCAAGGAAATACGGCCCAGATGGGACCATGGCACTGGCGTTGTCACCTGCTCCTTCTGGTGTGAACGTATCTCAGTCCGGTGGGGCATTTTCTTCTCCACCTGCTTCGGCCGGATCAGCCTCACCTTCTTCCTTGAAGAAAGCAAGAGGCCGACCACCCGGTTCCAGCAAGAAACAGCAAATGGAAGCTCTTGGATCTGCGGGAGTTGGATTTACACCTCATGTTATCACAGTGAAAGCTGGAGAGGATGTATCATCAAAAATAATGTCATTTTCTCAGCATGGTCCAAGGGCTGTTTGCATCCTATCAGCAAATGGTGCCATCTCTAATGTGACTCTCCGCCAACCAGCAACATCTGGTGGCACTGTAACTTATGAGGGACGGTTTGAAATTCTCTCCCTTTCTGGTTCATTTCTGCTCTCAGAAAATGGTGGTCAGCGAAGCAGAACTGGGGGATTAAGCGTGTCATTGTCTGGTCCAGATGGCCGTGTTTTGGGTGGTGGCGTAGCAGGTCTTTTAACAGCTGCATCCCCTGTTCAGGTAGTTGTGGGTAGTTTTATTGCAGATGGCCGCAAGGAATCAAAGTCAGCAAGCCAAGTGGAACCCTCATCAGCCCCACCAAAGATTGCCCCAGTTGGTGGTGGGGGTGGGGTAACAGGAACAAGCAGCCCCCCGTCTCGTGGGACACTGAGTGAGTCATCTGGCGGACCTGGGAGCCCCCTTAACCAGAGCACGGGAGCCTGCAATAACAGTAATCCACCAGGAATGACGAGCATCCCATGGAAGTAG 1062 53.2 MSGSETGIMTTREPFSMGLQKNAVPSQPVIQNMRLAFSPDGAAVYKPVSGTSPPYQSSGGTGGDGSTGGAIIPHGLNMNMGSEPLKRKRGRPRKYGPDGTMALALSPAPSGVNVSQSGGAFSSPPASAGSASPSSLKKARGRPPGSSKKQQMEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSASQVEPSSAPPKIAPVGGGGGVTGTSSPPSRGTLSESSGGPGSPLNQSTGACNNSNPPGMTSIPWK* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 539605 545129 + Vvi18g47 Vvi18g47 779750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g47 353 SMART AT_hook_2 137 149 IPR017956 GO:0003677
Vvi18g47 353 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Vvi18g47 353 MobiDBLite consensus disorder prediction 282 353 - -
Vvi18g47 353 MobiDBLite consensus disorder prediction 49 154 - -
Vvi18g47 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 279 - -
Vvi18g47 353 Gene3D - 164 292 - -
Vvi18g47 353 MobiDBLite consensus disorder prediction 310 353 - -
Vvi18g47 353 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Vvi18g47 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 352 IPR039605 GO:0003680
Vvi18g47 353 CDD DUF296 163 277 IPR005175 -
Vvi18g47 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 352 - -
Vvi18g47 353 MobiDBLite consensus disorder prediction 109 134 - -
Vvi18g47 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Vvi18g47 353 MobiDBLite consensus disorder prediction 50 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g47 - - - vvi:100263332 600.127
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g47 . . . . . . . . Cmo05g00982 Cmo12g00629 Cma01g02039 . Car01g01608 . . . Cpe07g00602 Bhi04g01204 . . . Hepe08g1523 . . Cla08g00927 Cam08g1372 Cec08g0955 Cco08g1074 Clacu08g1080 . Cre08g0864 . . Cone17ag1478 . Lsi04g02421 Csa04g02738 . Cme03g01327 Blo17g00908 . . . . . . . . Cmo01g02098 . Cma12g00694 Cma05g00961 Car05g00844 . Cpe11g00774 Cpe02g00014 Bhi09g02829 . . . . Mch11g0030 . Cla11g01851 Cam11g1917 Cec11g1942 Cco11g1956 Clacu11g2082 Cmu11g1886 Cre11g2294 Lsi08g00770 . Chy07g00425 Cme07g00024
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi2g468 ECH 5 258 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 70.7 2.1e-92 336.3
Vvi16g499 ECH 1 260 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 53.8 7.1e-72 268.1
Vvi15g470 . 6 267 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.8 1.0e-70 264.2
Vvi15g896 ECH 92 342 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 50.2 1.9e-61 233.4
Vvi8g1051 . 36 261 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.5 6.9e-59 224.9
Vvi18g47 . 85 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.3 5.8e-58 221.9
Vvi2g637 . 84 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.3 7.4e-53 204.9
Vvi2g468 ECH 3 258 AT-hook Motif Nuclear Localized (AHL) Family AT4G22770 64.6 1.3e-78 290.4
Vvi15g470 . 6 280 AT-hook Motif Nuclear Localized (AHL) Family AT4G22770 53.0 5.3e-69 258.5
Vvi16g499 ECH 4 248 AT-hook Motif Nuclear Localized (AHL) Family AT4G22770 56.3 2.9e-67 252.7
Vvi15g896 ECH 89 280 AT-hook Motif Nuclear Localized (AHL) Family AT4G22770 55.4 9.3e-58 221.1
Vvi18g47 . 82 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G22770 53.0 6.9e-53 204.9
Vvi8g1051 . 38 257 AT-hook Motif Nuclear Localized (AHL) Family AT4G22770 50.6 2.2e-51 199.9
Vvi16g499 ECH 47 245 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 67.8 5.2e-71 265.4
Vvi15g470 . 55 243 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 64.5 5.2e-63 238.8
Vvi2g468 ECH 5 200 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 62.1 5.8e-62 235.3
Vvi18g47 . 67 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 54.3 2.1e-56 216.9
Vvi15g896 ECH 78 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 50.2 1.1e-52 204.5
Vvi2g637 . 81 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 51.7 5.1e-50 195.7
Vvi8g1051 . 38 223 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 55.2 8.7e-50 194.9
Vvi16g499 ECH 39 243 AT-hook Motif Nuclear Localized (AHL) Family AT5G51590 59.8 2.3e-66 250.0
Vvi15g470 . 55 243 AT-hook Motif Nuclear Localized (AHL) Family AT5G51590 59.0 1.4e-58 224.2
Vvi8g1051 . 38 223 AT-hook Motif Nuclear Localized (AHL) Family AT5G51590 50.2 7.9e-46 181.8
Vvi18g47 . 85 278 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 55.3 1.5e-51 200.7
Vvi2g468 ECH 5 209 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 52.4 1.2e-50 197.6
Vvi15g470 . 55 243 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 52.8 1.6e-45 180.6
Vvi16g499 ECH 47 250 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 62.8 9.2e-68 254.6
Vvi2g468 ECH 3 205 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 57.3 3.3e-57 219.5
Vvi16g499 ECH 1 313 AT-hook Motif Nuclear Localized (AHL) Family AT4G00200 51.9 6.6e-69 258.1
Vvi15g470 . 14 332 AT-hook Motif Nuclear Localized (AHL) Family AT4G00200 50.9 1.0e-66 250.8
Vvi2g468 ECH 5 259 AT-hook Motif Nuclear Localized (AHL) Family AT4G00200 54.5 7.5e-65 244.6
Vvi8g1051 . 37 232 AT-hook Motif Nuclear Localized (AHL) Family AT4G00200 52.2 8.0e-51 198.0
Vvi2g637 . 1 317 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 51.1 2.2e-71 266.5
Vvi15g896 ECH 92 282 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 54.5 3.1e-49 193.0
Vvi8g1051 . 83 217 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 61.5 1.3e-41 167.2
Vvi18g47 . 143 272 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 59.3 4.3e-40 162.2
Vvi2g637 . 134 262 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 58.5 4.0e-38 155.6
Vvi2g468 ECH 51 187 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 56.9 4.0e-38 155.6
Vvi18g47 . 1 354 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 56.9 1.8e-88 323.2
Vvi15g896 ECH 40 287 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 52.5 2.6e-58 223.0
Vvi8g1051 . 38 256 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 53.4 2.3e-54 209.9
Vvi2g468 ECH 3 201 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 58.2 1.5e-53 207.2
Vvi15g470 . 48 280 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 53.5 4.3e-53 205.7
Vvi16g499 ECH 33 246 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 54.4 1.0e-51 201.1
Vvi2g329 ECH 53 246 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 52.5 1.7e-49 193.7
Vvi14g556 . 74 251 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 51.0 2.3e-43 173.3
Vvi15g896 ECH 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 52.5 3.6e-84 308.9
Vvi18g47 . 81 278 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 53.9 6.2e-52 201.8
Vvi8g1051 . 34 237 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 53.1 1.7e-49 193.7
Vvi2g468 ECH 4 193 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 53.4 4.2e-48 189.1
Vvi2g637 . 83 268 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 54.9 5.4e-48 188.7
Vvi16g499 ECH 41 238 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 54.7 7.1e-48 188.3
Vvi15g470 . 52 243 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 52.8 2.5e-45 179.9
Vvi2g329 ECH 36 310 AT-hook Motif Nuclear Localized (AHL) Family AT1G63480 50.2 5.1e-62 235.3
Vvi14g556 . 45 358 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 52.5 4.1e-79 292.4
Vvi13g335 . 1 299 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 52.2 8.3e-69 257.7
Vvi15g462 . 75 237 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 67.1 1.1e-55 214.2
Vvi14g559 . 67 266 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 62.7 5.3e-55 211.8
Vvi2g465 . 29 181 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 65.6 1.6e-51 200.3
Vvi15g462 . 55 297 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 54.5 2.3e-64 242.7
Vvi2g465 . 26 232 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 59.3 2.8e-62 235.7
Vvi13g335 . 83 296 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 54.0 4.2e-58 221.9
Vvi14g559 . 67 268 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 55.4 1.0e-56 217.2
Vvi15g462 . 79 235 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 51.2 1.4e-46 183.7
Vvi14g559 . 59 220 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 54.8 1.3e-44 177.2
Vvi2g465 . 26 181 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 50.9 2.8e-44 176.0
Vvi15g462 . 68 301 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 65.4 1.0e-75 280.4
Vvi2g465 . 29 241 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 67.8 1.1e-74 276.9
Vvi14g559 . 60 220 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 67.7 1.1e-56 217.2
Vvi13g335 . 67 291 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 52.2 2.0e-55 213.0
Vvi2g635 . 114 253 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 54.2 9.4e-45 177.6
Vvi14g559 . 1 276 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 61.4 1.2e-75 280.4
Vvi15g462 . 81 233 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 67.7 2.4e-55 213.0
Vvi2g465 . 28 180 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 68.3 4.1e-55 212.2
Vvi13g335 . 83 283 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 52.0 7.7e-54 208.0
Vvi14g559 . 1 276 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 59.7 1.7e-84 309.7
Vvi13g335 . 81 298 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.2 1.4e-70 263.5
Vvi2g465 . 27 241 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 58.2 9.6e-64 240.7
Vvi15g462 . 80 301 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 57.8 1.4e-62 236.9
Vvi2g635 . 123 253 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 52.8 3.0e-41 166.0
Vvi2g465 . 27 185 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 71.1 6.1e-66 248.1
Vvi15g462 . 80 235 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 71.8 1.5e-64 243.4
Vvi2g635 . 61 253 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 55.8 5.0e-60 228.4
Vvi14g559 . 63 269 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 60.7 6.7e-57 218.0
Vvi13g335 . 83 234 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 65.1 1.3e-55 213.8
Vvi15g462 . 1 301 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 67.5 1.8e-87 319.7
Vvi2g465 . 27 241 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 68.2 1.1e-81 300.4
Vvi13g335 . 83 294 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 56.2 3.5e-62 235.7
Vvi14g559 . 66 276 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 62.0 2.3e-61 233.0
Vvi2g635 . 128 253 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 58.1 1.6e-46 183.7
Vvi2g635 . 61 251 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 62.4 4.8e-66 248.4
Vvi2g465 . 27 241 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 58.5 2.4e-65 246.1
Vvi15g462 . 80 233 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 74.7 7.6e-64 241.1
Vvi13g335 . 82 288 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 55.6 3.9e-60 228.8
Vvi14g559 . 63 276 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.1 8.7e-60 227.6
Vvi15g462 . 1 301 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 62.0 2.4e-87 319.3
Vvi2g465 . 26 241 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 70.7 5.6e-84 308.1
Vvi14g559 . 66 276 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 64.0 4.6e-62 235.3
Vvi13g335 . 83 298 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 55.2 2.4e-58 223.0
Vvi2g635 . 81 253 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 51.2 1.1e-47 187.6
Vvi2g465 . 36 180 AT-hook Motif Nuclear Localized (AHL) Family AT4G35390 72.1 6.0e-56 214.9
Vvi15g462 . 89 233 AT-hook Motif Nuclear Localized (AHL) Family AT4G35390 70.1 3.9e-55 212.2
Vvi14g559 . 75 219 AT-hook Motif Nuclear Localized (AHL) Family AT4G35390 67.1 2.4e-52 203.0
Vvi13g335 . 91 234 AT-hook Motif Nuclear Localized (AHL) Family AT4G35390 67.1 8.9e-52 201.1
Vvi15g462 . 1 301 AT-hook Motif Nuclear Localized (AHL) Family AT4G12050 58.0 1.2e-81 300.4
Vvi2g465 . 26 241 AT-hook Motif Nuclear Localized (AHL) Family AT4G12050 69.5 3.6e-81 298.9
Vvi14g559 . 63 220 AT-hook Motif Nuclear Localized (AHL) Family AT4G12050 70.3 4.1e-61 232.3
Vvi13g335 . 83 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G12050 56.6 5.5e-58 221.9
Vvi2g635 . 128 253 AT-hook Motif Nuclear Localized (AHL) Family AT4G12050 59.2 2.0e-47 186.8
Vvi15g462 . 82 232 AT-hook Motif Nuclear Localized (AHL) Family AT1G20900 68.8 5.1e-58 221.9
Vvi2g465 . 29 179 AT-hook Motif Nuclear Localized (AHL) Family AT1G20900 69.4 1.1e-57 220.7
Vvi13g335 . 79 233 AT-hook Motif Nuclear Localized (AHL) Family AT1G20900 67.1 9.6e-57 217.6
Vvi14g559 . 67 218 AT-hook Motif Nuclear Localized (AHL) Family AT1G20900 68.8 4.0e-55 212.2
Vvi15g462 . 78 234 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 65.7 8.4e-58 221.1
Vvi13g335 . 80 235 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 65.5 3.2e-57 219.2
Vvi2g465 . 29 181 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 66.7 1.2e-56 217.2
Vvi14g559 . 67 220 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 66.7 2.7e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002543 0 3 1 0 0 1 3 1 1 2 2 2 3 2 2 3 1 1 3 2 2 2 2 2 2 2 2 5 3 1 56