Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g47 ATGTCAGGATCTGAAACTGGAATCATGACTACCAGAGAGCCCTTCAGCATGGGTCTCCAGAAAAATGCGGTACCGTCACAGCCGGTGATACAAAACATGCGCTTAGCCTTCAGTCCAGACGGAGCAGCTGTGTACAAGCCCGTTTCCGGGACCTCCCCGCCGTACCAGTCTTCCGGCGGTACCGGTGGAGATGGTTCCACCGGCGGCGCCATCATACCTCACGGCCTTAACATGAATATGGGGAGTGAGCCCTTGAAGAGGAAGAGAGGGAGGCCAAGGAAATACGGCCCAGATGGGACCATGGCACTGGCGTTGTCACCTGCTCCTTCTGGTGTGAACGTATCTCAGTCCGGTGGGGCATTTTCTTCTCCACCTGCTTCGGCCGGATCAGCCTCACCTTCTTCCTTGAAGAAAGCAAGAGGCCGACCACCCGGTTCCAGCAAGAAACAGCAAATGGAAGCTCTTGGATCTGCGGGAGTTGGATTTACACCTCATGTTATCACAGTGAAAGCTGGAGAGGATGTATCATCAAAAATAATGTCATTTTCTCAGCATGGTCCAAGGGCTGTTTGCATCCTATCAGCAAATGGTGCCATCTCTAATGTGACTCTCCGCCAACCAGCAACATCTGGTGGCACTGTAACTTATGAGGGACGGTTTGAAATTCTCTCCCTTTCTGGTTCATTTCTGCTCTCAGAAAATGGTGGTCAGCGAAGCAGAACTGGGGGATTAAGCGTGTCATTGTCTGGTCCAGATGGCCGTGTTTTGGGTGGTGGCGTAGCAGGTCTTTTAACAGCTGCATCCCCTGTTCAGGTAGTTGTGGGTAGTTTTATTGCAGATGGCCGCAAGGAATCAAAGTCAGCAAGCCAAGTGGAACCCTCATCAGCCCCACCAAAGATTGCCCCAGTTGGTGGTGGGGGTGGGGTAACAGGAACAAGCAGCCCCCCGTCTCGTGGGACACTGAGTGAGTCATCTGGCGGACCTGGGAGCCCCCTTAACCAGAGCACGGGAGCCTGCAATAACAGTAATCCACCAGGAATGACGAGCATCCCATGGAAGTAG 1062 53.2 MSGSETGIMTTREPFSMGLQKNAVPSQPVIQNMRLAFSPDGAAVYKPVSGTSPPYQSSGGTGGDGSTGGAIIPHGLNMNMGSEPLKRKRGRPRKYGPDGTMALALSPAPSGVNVSQSGGAFSSPPASAGSASPSSLKKARGRPPGSSKKQQMEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSASQVEPSSAPPKIAPVGGGGGVTGTSSPPSRGTLSESSGGPGSPLNQSTGACNNSNPPGMTSIPWK* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 539605 545129 + Vvi18g47 Vvi18g47 779750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g47 353 SMART AT_hook_2 137 149 IPR017956 GO:0003677
Vvi18g47 353 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Vvi18g47 353 MobiDBLite consensus disorder prediction 282 353 - -
Vvi18g47 353 MobiDBLite consensus disorder prediction 49 154 - -
Vvi18g47 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 279 - -
Vvi18g47 353 Gene3D - 164 292 - -
Vvi18g47 353 MobiDBLite consensus disorder prediction 310 353 - -
Vvi18g47 353 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Vvi18g47 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 352 IPR039605 GO:0003680
Vvi18g47 353 CDD DUF296 163 277 IPR005175 -
Vvi18g47 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 352 - -
Vvi18g47 353 MobiDBLite consensus disorder prediction 109 134 - -
Vvi18g47 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Vvi18g47 353 MobiDBLite consensus disorder prediction 50 64 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g47 - - vvi:100263332 600.127