Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g470 ATGGGCAGATTCGGATGGCTAGGGTTGTGCAAGCGTCATTTGCAGTCAACATCGGCCATAGATTTTTTGCCGATTGAACATTGCAGGGTTCCTGCATTGATTCACCAGAGAATTTTGCACGGTTACAACGTTCTTCATGGGAAGCCTTCTGATTTTGCAACCATGGGAATACCATCAGCAACGCGGTATATTCATGCTACAGGGATTTGCTATTCCACTGAACGGAATTACTATGAAATTCTGGGTGTTCCTCAGAATGCCAGTCGAGATGAAATCAAGAAGGCTTTTCATGTGCTTGCTAAGAAGTTCCATCCAGATGCAAACAAGAACAATCCTTATGCAAAGAGGAAGTTTCAAGAGATAAGAGATGCCTATGAGACTTTGCAAGATTCCGAAAAGAGAGCACAATATGACAGGGTACCAACACTTTCCCATTTTTCAGAGAGTGTAAAAGATGCTGCTGGAGATGGGTTCAGATATGCTTATAGAAGCCATTTCTCTGATTCATTCCGTAAAATTTTCGCTGAGATCTTTGAACATGAGACTGAAAATTTTGCAACTGATATTCAGGTGGAGCTGTCACTCTCTTTTTCTGAAGCTGCTAAAGGATGCACAAAGCATCTCTCTTTTGATGCATATATCCCCTGTGATTCCTGCTATGGGCGTGGCCATCCTGTTGATGCCAAGACAAAAGTTTGTCCAATTTGCAAAGGCATTGGGAGAGTTACTATTCCTCCATTCACATCGACATGTAGTAGTTGTAAAGGCTTGGGGCGAATTGTTAAGGAGCATTGTACAACATGCAGAGGATCAGGGGTAGTTGAAGGTGTTAAGGATGTTGAAGTTGTTATACCAGCAGGTGTTGATTCTGGAGATACTATCCATGTGCCAAAAGTTGGTAATGCTGGAGGACGAGGAGTTGAACCTGGGAACTTATACATAAAATTAAAGGCACAACTTTACCTATTTCACTCTGTTGCTAAAGATCGTACTTTTGTCAGAGATGGTGCAGATGTTTATGTGGAATCTAGTATCAGCTTTACACAAGCAATTCTTGGTGGTACAGTTGAGGTGCCAACTCTATCTGGGAAGATGCAATTAAAAATACCAAAGGGGGTTCAGCCTGGACAGCTTTTGGTACTAAGAGGAAAAGGATTGCCAAAGCATGGTCTTCTTGTAGACCATGGAGATCAGTATGTGCGTTTCCGCATTAACTTCCCCACGGCAATAAATGAACGCCAACGTGCTATCTTAGAGGAATTTGCAAAGGAAGAAATAGTTCATGACAGCAGCACATCTGGTGAAGGAAATTGGTGGCAGCAAATTTTTGAACGTGGAACGGGTCCTAGGTTTATGCTTGAAATGTCTCTGTTCATATTGGTTCTTCTGTTGCTGAGTAAAACCATGGGCTGA 1413 42.32 MGRFGWLGLCKRHLQSTSAIDFLPIEHCRVPALIHQRILHGYNVLHGKPSDFATMGIPSATRYIHATGICYSTERNYYEILGVPQNASRDEIKKAFHVLAKKFHPDANKNNPYAKRKFQEIRDAYETLQDSEKRAQYDRVPTLSHFSESVKDAAGDGFRYAYRSHFSDSFRKIFAEIFEHETENFATDIQVELSLSFSEAAKGCTKHLSFDAYIPCDSCYGRGHPVDAKTKVCPICKGIGRVTIPPFTSTCSSCKGLGRIVKEHCTTCRGSGVVEGVKDVEVVIPAGVDSGDTIHVPKVGNAGGRGVEPGNLYIKLKAQLYLFHSVAKDRTFVRDGADVYVESSISFTQAILGGTVEVPTLSGKMQLKIPKGVQPGQLLVLRGKGLPKHGLLVDHGDQYVRFRINFPTAINERQRAILEEFAKEEIVHDSSTSGEGNWWQQIFERGTGPRFMLEMSLFILVLLLLSKTMG* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5173363 5218160 - Vvi18g470 Vvi18g470 780173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g470 470 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 203 274 IPR036410 -
Vvi18g470 470 ProSitePatterns Nt-dnaJ domain signature. 118 137 IPR018253 -
Vvi18g470 470 Gene3D - 187 314 - -
Vvi18g470 470 CDD DnaJ_zf 216 272 IPR001305 GO:0031072|GO:0051082
Vvi18g470 470 Pfam DnaJ domain 76 138 IPR001623 -
Vvi18g470 470 ProSiteProfiles dnaJ domain profile. 76 141 IPR001623 -
Vvi18g470 470 PRINTS DnaJ domain signature 78 96 IPR001623 -
Vvi18g470 470 PRINTS DnaJ domain signature 96 111 IPR001623 -
Vvi18g470 470 PRINTS DnaJ domain signature 113 133 IPR001623 -
Vvi18g470 470 SUPERFAMILY HSP40/DnaJ peptide-binding domain 332 418 IPR008971 GO:0006457|GO:0051082
Vvi18g470 470 Pfam DnaJ central domain 216 272 IPR001305 GO:0031072|GO:0051082
Vvi18g470 470 CDD DnaJ 76 130 IPR001623 -
Vvi18g470 470 Gene3D - 328 434 - -
Vvi18g470 470 ProSiteProfiles Zinc finger CR-type profile. 203 277 IPR001305 GO:0031072|GO:0051082
Vvi18g470 470 Gene3D - 216 272 - -
Vvi18g470 470 SMART dnaj_3 75 133 IPR001623 -
Vvi18g470 470 Hamap Chaperone protein DnaJ [dnaJ]. 73 455 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi18g470 470 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 50 448 - -
Vvi18g470 470 Gene3D DnaJ domain 73 186 IPR036869 -
Vvi18g470 470 CDD DnaJ_C 188 408 - -
Vvi18g470 470 Pfam DnaJ C terminal domain 189 407 IPR002939 -
Vvi18g470 470 SUPERFAMILY HSP40/DnaJ peptide-binding domain 188 317 IPR008971 GO:0006457|GO:0051082
Vvi18g470 470 SUPERFAMILY Chaperone J-domain 71 167 IPR036869 -
Vvi18g470 470 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 50 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g470 - - - vvi:100259253 892.108
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30